Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1761 ATGGCAAACCTCCATTTCGCGTTCGCTCTCACACTTTCGCTTCTACTCTGCAATGTCTCAGCTGCACCGTCCACTACTTTACCTGCCAAGATTGTTAGTGGGTTTTTCTCGAATGTCGTGTCTGCATTCACCAAATTGGTGTGGTCGCTCAAAGCACCCACCAAAACGGGTATATACGTATCCCAATcttattgcattttttattttattttattttttaatttgaaaaaagtttggtTATATGGAATTGGACGTGTTACAGCGATTGGTGGGAAGTCGATGATGAAGTTCGAGAGTGGGTACACTGTGGAAACCGTGTTTGATGGAAGCAAGCTTGGAATTGAGCCTTACGCGGTTGAGGTGTTGCATAATGGGGAGCTTCTCATTCTGGATTCGGTTAATAGTAACATTTATAGGATTTCATCTCCGCTTTCTTTGTATAGCAGACCAAAGCTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATGTTGATGGAAGGCTTAGGGAGGCTAGGATGAATCACCCAAAGGGGATAACGGTTGATAACCGGGGAAATATCTATGTTGCAGACATAATAAATATGGCAATTAGGAAAATTAGTGATTCAGGGGTCACAACAATTGCTGGAGGAAAGTGGAGCCGTGGAGGGGGGCATGTTGATGGTCCAAGTGAAGAAGCTAAATTTTCTAATGATTTTGACGTGGTTTATGTTGGAAGTAGTTGTTCTCTACTTGTCATAGACAGGGGAAATCAAGCCATAAGGGAGATCCAACTACACTTTGATGATTGTGCTTATCAATATGAAAATGGATTTCCACTTGGAATTGCAATGCTTGTTGGGGCTGGTTTCTTTGGCTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTAGCATCTCAGGATGCTGAGGATCCATCAATGTCTGGCATTTCACCGAGTCCATATCAAAAGCCCTTGAAGTCTGTCAGGCCTCCTTTAATTCCATCTGAAGATGAATCAGATAAGCAAGAAGAAAGTTTCTTCGGATCCATTGGGAAGCTTCTTGCCAATGCTGGGGCATCAGTAGTGGAAATAATGGGAGGGGTATTTCCTGGTTTCAGAAAAAAGCCGCAGAGCTATGAATTTCAAAGCCAACCACTGTTCCAGCAACCTCAACAGCAAGTAAATGTTTGGCCTGTGCAAGAAAGTTTTGTGATTCCAGATGAAGATGAGCCCCCTTCTATCGATCCAAGAACCCCAACACCACGGAAAACATATGCTTTCATGTCCAAGGATGCAGAAAAGATGCAACAACTTTGGCAAAGTCGTGCATTCTATAGCGGATGGGATGGAGATCTTCAGCAGCAACAGCAACAACTAAAAcatcagcagcagcagcaacaacaactgAAACATCATCATCGCCATCAGTATCATTCATCAATCCCGCACACTTACTATGAGCAAAGCCATGAGGAAACGAAAGAGATATTATTTGGGGCAGTGCAAGAACAGGATGGGAAGCAGGAAACTGTAGTTATCAAGCCTGTGGAATATGGTCAACCTCTCTATGATCATCACTATATTCGGCCTCGAATCAGTTCAATGGGTTATATCAACCAGTACTAA 1617 0.415 MANLHFAFALTLSLLLCNVSAAPSTTLPAKIVSGFFSNVVSAFTKLVWSLKAPTKTGIYVSQSYCIFYFILFFNLKKVWLYGIGRVTAIGGKSMMKFESGYTVETVFDGSKLGIEPYAVEVLHNGELLILDSVNSNIYRISSPLSLYSRPKLVAGSAEGYSGHVDGRLREARMNHPKGITVDNRGNIYVADIINMAIRKISDSGVTTIAGGKWSRGGGHVDGPSEEAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGFPLGIAMLVGAGFFGYMLALLQRRLGTIVASQDAEDPSMSGISPSPYQKPLKSVRPPLIPSEDESDKQEESFFGSIGKLLANAGASVVEIMGGVFPGFRKKPQSYEFQSQPLFQQPQQQVNVWPVQESFVIPDEDEPPSIDPRTPTPRKTYAFMSKDAEKMQQLWQSRAFYSGWDGDLQQQQQQLKHQQQQQQQLKHHHRHQYHSSIPHTYYEQSHEETKEILFGAVQEQDGKQETVVIKPVEYGQPLYDHHYIRPRISSMGYINQY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1761 538 Coils Coil 449 469 - -
Ssu2g1761 538 PANTHER NHL REPEAT PROTEIN 10 67 - -
Ssu2g1761 538 PANTHER NHL REPEAT PROTEIN 78 538 - -
Ssu2g1761 538 Gene3D - 48 258 IPR011042 -
Ssu2g1761 538 MobiDBLite consensus disorder prediction 305 338 - -
Ssu2g1761 538 PANTHER - 10 67 - -
Ssu2g1761 538 PANTHER - 78 538 - -
Ssu2g1761 538 SUPERFAMILY NHL repeat 92 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1761 Ssu-Chr2 68129372 68132388 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1761 - - gmx:100799483 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1761 2 68129372 68132388 Ssu2g1761 2 68129372 68132388 ECH
Ssu2g1761 2 68129372 68132388 Ssu5g1054 5 33173997 33179499 PCT