Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1030 ATGGCAGGAGGAGGAGCTGCACCACAACCCAAGCAGGATGAGCATCAGCCACATCCAGTGAAAGATCAATTACCAAATGTTTCTTTTTGCATTACAAGTCCTCCTCCTTGGCCGGAGGCAATCCTACTTGGTTTCCAACATTACCTGGTGATGCTTGGCACAACCGTTCTAATTCCCAGCTCTCTTGTGCCCCAGATGGGAGGAGGAAATGAAGAGAAAGCAAAAGTGATTCAGACTCTACTGTTTGTGGCTGGCATAAACACATTTTTCCAAACATTCTTTGGGACTCGTTTGCCTGCAGTTATTGGGGGATCCTACACCTTTGTGCCAACCACCATTTCAATCATTCTTGCCGGTCGCTACAGTGACATTGTGAATCCTCAGGAGAAATTTGAGAGGATAATGCGCGGAACACAGGGTGCCCTCATTGTTGCCTCAACCCTCCAAATTGTTTTAGGCTTCAGTGGCCTTTGGCGCAATGTAGTGAGGTTATTAAGTCCTCTCTCCGCTGTTCCCTTGGTTGCTCTGTCAGGCTTTGGACTGTATGAACTGGGTTTTCCtgtgCTTGCAAAATGTGTGGAGATTGGGCTGCCAGAAATCATCATCCTAGTAGTATTTTCACAgTACATTCCTCATATGATGAAAGGAGAAAAGCCCGTCTTTGATCGCTTTGCAGTTATATTCTCAGTGGCAATTGTGTGGATTTATGCTCATCTTCTTACAGTTGGTGGAGCTTACAGAAATTCAGCACCTAAAACCCAAATTACTTGCAGAACCGATCGTGCTGGAATTATAGGGGGTGCTCCTTGGATAAGAATCCCATATCCTTTTCAATGGGGAGCTCCTACATTTGATGCTGGAGAAGCTTTTGCTATGATGGCTGCTTCATTTGTTGCTCTAGTAGAGGTACGCAAGTGCAACACCAATTCCACCTCAGTTCTTAGCCGTGGTGTCGGTTGGCAGGGAGTGGGAATTTTGTTGTCTGGAATCTTTGGGACAGGGAATGGATCATCAGTTTCTGTAGAGAATGCAGGACTCTTAGCTTTGACACGTGTGGGTAGTCGAAGAGTTGTTCAAATATCAGCTGGATTCATGATCTTTTTCTCAATTCTTGGAAAATTTGGAGCCGTTTTTGCTTCAATTCCTGCTCCAATAGTTGCAGCTTTATATTGTCTTTTCTTTGCCTATGTAGGCTCAGCAGGTCTTAGTTTCCTTCAATTTTGCAATTTAAACAGCTTCAGAACTAAATTCATCTTAGGCTTCTCTATTTTCATGGGGTTCTCCATACCTCAATACTTCAATGAGTACACAGCATTTAAAGGCTACGGTCCTGTACACACGCGTGCGAGATGGTTTAATGACATGATCAACGTGCCATTTGCGTCTGAACCATTTGTTGCTGGTTTATTGGCACTGTTCTTGGACGTTACATTGCGCAAGAAAGACAACCAGACCCGTAAAGACAGAGGCATGCACTGGTGGGACAGATTCCGTTCATTCAAGACAGATACCAGGAGCGAGGAGTTTTACTCTCTACCTTTTAATCTAAACAAGTTTTTCCCTTCTGTGTGA 1572 0.4421 MAGGGAAPQPKQDEHQPHPVKDQLPNVSFCITSPPPWPEAILLGFQHYLVMLGTTVLIPSSLVPQMGGGNEEKAKVIQTLLFVAGINTFFQTFFGTRLPAVIGGSYTFVPTTISIILAGRYSDIVNPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVVRLLSPLSAVPLVALSGFGLYELGFPVLAKCVEIGLPEIIILVVFSQYIPHMMKGEKPVFDRFAVIFSVAIVWIYAHLLTVGGAYRNSAPKTQITCRTDRAGIIGGAPWIRIPYPFQWGAPTFDAGEAFAMMAASFVALVEVRKCNTNSTSVLSRGVGWQGVGILLSGIFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGSAGLSFLQFCNLNSFRTKFILGFSIFMGFSIPQYFNEYTAFKGYGPVHTRARWFNDMINVPFASEPFVAGLLALFLDVTLRKKDNQTRKDRGMHWWDRFRSFKTDTRSEEFYSLPFNLNKFFPSV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1030 523 Pfam Permease family 39 433 IPR006043 GO:0016020|GO:0022857|GO:0055085
Ssu5g1030 523 PANTHER NUCLEOBASE-ASCORBATE TRANSPORTER-LIKE PROTEIN 1 523 - -
Ssu5g1030 523 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 1 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1030 Ssu-Chr5 32614212 32618637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1030 7 523 Organic Solute Cotransporters AT1G60030 79.317 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1030 - - gmx:100776272 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1735 2 67489947 67494008 Ssu5g1030 5 32614212 32618637 PCT