Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1003 ATGGCTCTATCGCGCATTGCTTCGTCCTCGCCATCGAATAATCTCCTGAAACCCCTCTCGTCCTACTTATCGCTACGACGTCGTTCgatctcctcctcctcctcggACCCCCTCACCGTGGAGACTTCGGTCCCGTTCACCTCCCACTACTGCGACGCGCCCTCACGCGCTGTGGAGACCTCCGCGGCGGAGCTGCTCTCGTTCTTCCGCCACATGGCGTTGATGCGGCGGATGGAGATCGCGGCGGACTCCCTCTACAAGGCGAAGCTGATCCGCGGGTTCTGCCACCTCTACGACGGCCAGGAGGCGGTGGCGGTGGGCATGGAGGCGGCGATCACGCGCAAGGACTGCATCATCACCGCCTACCGCGACCACTGCACCTTCCTCAGCCGCGGCGGAACCCTAATCGAGGTCTTCGCGGAGCTCATGGGGCGCCGCGACGGGTGCTCCAAGGGGAAAGGTGGTTCCATGCATTTTTATAGGAAAGAGGGTGGTTTCTACGGTGGCCATGGCATTGTTGGGGCCCAGGTTCCGCTTGGTTGTGGCTTGGCTTTTGCTCAGAAGTATTCCAAGGATGAGAATGTTACTTTTGCTTTGTACGGTGATGGTGCTGCCAATCAGGGGCAGTTGTTCGAGGCGCTCAACATTGCCGCGCTTTGGGATCTCCCCGCCATTTTGGTCTGCGAGAATAATCATTATGGAATGGGGACTGCAGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTCCCTGGATTGAAGGTAGATGGCATGGATGCTCTTGCTGTGAAACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCTATTATTCTTGAAATGGACACGTACAGATACCACGGCCACTCCATGTCTGATCCTGGCAGCACATACCGCACACGTGATGAGATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGCAAGAAAGCTGCTATTGACCCATGAGATTGCTACTGAAAAGGAGCTAAAGGACATTGAAAAGGAAGTAAGAAAAGAAGTTGATGAAGCCATTGCCAAAGCAAAGGAAAGTCAACAGCCAGAGCCATCTGATTTATTTACCAATGTATATGTTAAAGGTTTTGGGGTCGAGGCTTGTGGCGCTGATAGAAAAGAAGTTAGAGCTACTTTGCCCTGA 1188 0.5219 MALSRIASSSPSNNLLKPLSSYLSLRRRSISSSSSDPLTVETSVPFTSHYCDAPSRAVETSAAELLSFFRHMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRKDCIITAYRDHCTFLSRGGTLIEVFAELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLGCGLAFAQKYSKDENVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDALAVKQACKFAKEFALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERARKLLLTHEIATEKELKDIEKEVRKEVDEAIAKAKESQQPEPSDLFTNVYVKGFGVEACGADRKEVRATLP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1003 395 CDD TPP_E1_PDC_ADC_BCADC 68 358 - -
Ssu5g1003 395 Pfam Dehydrogenase E1 component 71 366 IPR001017 GO:0016624
Ssu5g1003 395 Coils Coil 333 353 - -
Ssu5g1003 395 Gene3D - 20 390 - -
Ssu5g1003 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 9 395 - -
Ssu5g1003 395 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 64 375 IPR017597 GO:0004739|GO:0006086|GO:0043231
Ssu5g1003 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 9 395 - -
Ssu5g1003 395 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 53 376 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1003 Ssu-Chr5 31897117 31907563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1003 1 395 Acyl Lipid Metabolism Gene Families AT1G24180 80.051 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1003 K00161 - gmx:100813933 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1690 2 66153926 66159987 Ssu5g1003 5 31897117 31907563 PCT