Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1690 ATGGCTCTATCACGTTTATCCCACCGCAGCGTCGGATCCACTCTCTTCAAACCCTTCTCCGCCGTCTCCACCCGCTCGATCTCCTCCGACAACGCCTCCCTCACGGTCGAGACCTCGGTCCCCTTCACCGCGCACAACTGCGACCCTCCCTCCCGCGCCGTCGCGACCTCCTCCTCGGAGCTCCTCTCCTTCTTCCGCGACATGGCCATGATGCGCCGCATGGAGATCGCCGCCGACTCCCTCTACAAGGCGAAACTCATCCGCGGCTTCTGCCACCTCTACGACGGCCAGGAGGCCGTCGCCGTCGGCATGGAGGCCGGGATCACCAAGAGGGACTGCATCATCACGGCGTACCGCGACCACTGCATCTTCCTCGGCCGCGGCGGAACGCTGCTGGAGGTCTTCGCGGAGCTTATGGGGCGCAAGGATGGGTGCTCGAAGGGGAAGGGGGGTTCGATGCATTTTTATAAGAAGGAGAGTGGGTTCTACGGCGGGCACGGGATCGTGGGGGCGCAGGTGCCGCTGGGGTGTGGGTTGGCGTTTGCGCAGAAGTATTGTAAGGATGAGACTGTGACTTTTGCGTTGTATGGGGACGGGGCTGCCAACCAGGGGCAGCTCTTTGAGGCGCTTAATATAGCCGCGCTTTGGGATCTTCCTGCTATTTTGGTCTGCGAGAATAATCACTATGGGATGGGGACTGCGGAGTGGAGGGCTGCGAAGAATCCTGCATATTACAAGCGTGGGGATTATGTGCCTGGCTTGAAGGTAGATGGCATGGACGTTCTTGCTGTTAAACAAGCTTGTAAATTTGCAAAGGAACATGCTTTGAAGAATGGGCCCCTTATTCTTGAAATGGACACTTACAGATACCATGGCCACTCTATGTCTGATCCTGGCAGCACATACCGCACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGTTGCTGTCTCATGATATTGCTGCTGAAAAGGAGCTAAAGGACATTGAAAAAGAAGTCAGAAAACAAGTTGACGAAGCCATTGCTAAAGCAAAGGAGAGTCCAATGCCAGACCCATCTGATCTATTTACTAATGTCTACGTTAAAGGTTTAGGAGTTGAGGCATTTGGTGTTGATAGGAAAGAAGTGAGAGCTACTTTACCATAA 1176 0.5425 MALSRLSHRSVGSTLFKPFSAVSTRSISSDNASLTVETSVPFTAHNCDPPSRAVATSSSELLSFFRDMAMMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAGITKRDCIITAYRDHCIFLGRGGTLLEVFAELMGRKDGCSKGKGGSMHFYKKESGFYGGHGIVGAQVPLGCGLAFAQKYCKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKNPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLSHDIAAEKELKDIEKEVRKQVDEAIAKAKESPMPDPSDLFTNVYVKGLGVEAFGVDRKEVRATLP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1690 391 MobiDBLite consensus disorder prediction 294 313 - -
Ssu2g1690 391 CDD TPP_E1_PDC_ADC_BCADC 64 354 - -
Ssu2g1690 391 Gene3D - 19 385 - -
Ssu2g1690 391 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 9 391 - -
Ssu2g1690 391 Pfam Dehydrogenase E1 component 67 362 IPR001017 GO:0016624
Ssu2g1690 391 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 59 371 IPR017597 GO:0004739|GO:0006086|GO:0043231
Ssu2g1690 391 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 9 391 - -
Ssu2g1690 391 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 56 372 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1690 Ssu-Chr2 66153926 66159987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1690 1 391 Acyl Lipid Metabolism Gene Families AT1G24180 79.494 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1690 K00161 - gmx:100816737 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1690 2 66153926 66159987 Ssu2g1690 2 66153926 66159987 ECH
Ssu2g1690 2 66153926 66159987 Ssu5g1003 5 31897117 31907563 PCT