Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0844 ATGGAATTCTGGGACCTATTCTTCGTGGCTCTGGTGCCGGTCCTGGAGACGCTCTTGGTTACCCTCCTGGGTTTATTAATTGCAACCGAACGATTTAACTTCCTGCGAAGCGTTGATGCAAGGAATTGTTTGAACAATCTTGTGTTTTACATCTTCACTCCGGCGCTCCTCATTGCCGATTTGGCCGAAACGATTACGTTTGCCCGGTTGGTTGAAATGTGGTTTATGCtggtgaatatatttttaacgtTTGTGGTTGGCTCCATTCTCGGTTGGCTGCTTAATAAAATCGCCAGAACCCCTGAACACCAGCGGGGCCTCGTCAATGGTTGCTGCACTGCTGGGAATTTGGGGAATTTGCTTCTTATCATTGTCCCAGCAGTTTGTGAGGAGAACAGTAGTATATTTGGAGATTCATCCACCTGCTCAACTTATGGAGAAGCTTACGCAGCAGTTTCTACGGGAGTAAGTGCAATTTTTATATGGACATATCTGTTGATCGTCATGGGGGCAAGTACGAATGAGAGCACTGAAAATGAGAATACTATCGACACCACAGCCAGAGCAATAAATTCTGCTGGATCCCTGGAAAGATTTCCAGCAAATATCACAGAATCATTGCTTACTTCAACGGATTCTCTGAGCATTGACAACCTTCCAGTTCAACCTGAGTCACCATTTGACAGAAATGGGAAAAAGATGCCAATCTTGGATTTTATTACACGCCCCTTTACAAAATGCACGAGATATGTCAAGCTGAAGATGGTGTTTACACCGTCAACAATTGCAGTGATTATTGGATTTTCCATTGGAGCAATTTCTCCAATTCGAAAACTCATGGTTGGTGACGATGCTCCCCTTCGTGTGATCATCTCTTCTGCATCTTTAGTGGGGGAGGCTATGATTGTGTCTATGACTTTGGTAGTTGGAGCAAATCTTCTTGatgGTTTAAAGAAGTCAGGAATAAGCTTTTTCTTGATCTTAGGGATTATGGTAGTGCGGTTCATAATTTCACCTATCTTGGGTATTTTGATTGTTAAAGCTGCACATTATTGGGGATTTGTGGGATCGTCTTCGTTATATCAGTTTGTTCTTATGCTTCAATATGCACTTCCACCTGCAACAACTGTAGGTACCGTTGCCCAGTTGATCGGGCTTGGGGAAAGTGAATGTTCTCTTGTCATGTTATGGACATATGCTGTTGCTACATTTAGTCTCACGCTTTGGTGCACTTTCTTCATGTGGATGCTGGAGTGA 1257 0.428 MEFWDLFFVALVPVLETLLVTLLGLLIATERFNFLRSVDARNCLNNLVFYIFTPALLIADLAETITFARLVEMWFMLVNIFLTFVVGSILGWLLNKIARTPEHQRGLVNGCCTAGNLGNLLLIIVPAVCEENSSIFGDSSTCSTYGEAYAAVSTGVSAIFIWTYLLIVMGASTNESTENENTIDTTARAINSAGSLERFPANITESLLTSTDSLSIDNLPVQPESPFDRNGKKMPILDFITRPFTKCTRYVKLKMVFTPSTIAVIIGFSIGAISPIRKLMVGDDAPLRVIISSASLVGEAMIVSMTLVVGANLLDGLKKSGISFFLILGIMVVRFIISPILGILIVKAAHYWGFVGSSSLYQFVLMLQYALPPATTVGTVAQLIGLGESECSLVMLWTYAVATFSLTLWCTFFMWMLE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0844 418 Pfam Membrane transport protein 11 409 IPR004776 GO:0016021|GO:0055085
Ssu5g0844 418 PANTHER - 1 417 IPR045033 GO:0080162
Ssu5g0844 418 PANTHER PROTEIN PIN-LIKES 3-LIKE ISOFORM X1 1 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0844 Ssu-Chr5 21949736 21974290 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0844 K24139 - ccaj:109811492 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0844 5 21949736 21974290 Ssu5g0844 5 21949736 21974290 ECH
Ssu2g2135 2 77090858 77096608 Ssu5g0844 5 21949736 21974290 PCT