Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0840 ATGGGAATTTTCCCAACCAAGTTCTTCACCAAAGCCCGTAACCTCATAGGCCTCGGACTCGCTTCCGCCGCCACCGCCGCGGCCTCCACTTCCGCCGCggcctcttcttcttcttccgaGGCCGAAATCGCCGGCCGGAAAATACTGAAAACGAAGCTCTGCATCATCGGAAGCGGCCCGGCGGCGCACACCGCCGCCATATACGCGGCGCGCGCGGAGCTGAAGCCGGTGCTCTTCGAAGGCTGGATGGCCAACGGCGTCGCTCCCGGCGGCCAgctcaccaccaccaccgacgTCGAGAACTTTCCAGGATTTCCGGCCGGCATCCTCGGCCCCGAGCTCATGAACCGCTGCCGCCAGCAGTCACTGCGCTTCGGCGCCGAGGTCGTCACGGAGACCGTGACGAACGTGGACTTCTCCCACCGGCCGTTTAGGGTTTTCACCGATTCGACCACCGTGGAGGCCGAATCCGTCGTCGTCGCCACCGGCGCCATCGCGAAGAGGCTGAATTTCGACGGCGCCGGCGACGGCCCCGACGGATTCTGGAACCGCGGGATATCAGCGTGCGCCGTGTGCGACGGCGCCGCGCCGATATTCCGGGGCCGACCGCTCGCTGTAATCGGTGGCGGTGATTCGGCGATGGAGGAAGCTAGCTTCCTCTCCAAGTTTGGTTCCAAGGTGTATATAATTCACAGGAGGGATAAGTTTAGGGCTTCTAAGATCATGCAGGGGAAGGTGATGAGTAATCCCAAAATTGAGGTGTTGTGGAATTCAGTGGTGGTTGGGGCTTATGGGGATGATAAGGGTAGGGTTCTTGGGGAGGTTAAGGTGAAGAATGTGGTGACTGGGGTTGTGACTGATTTGAAGGTTTCTGGTTTGTTCTTTGCAATTGGACATGAGCCTGCCACAAAGTTCTTGGATGGTCAACTTGAATTGGACTCTGATGGGTACGTTGTGACCAAACCTGGCACCACAAAGACTAGTGTTGAGGGAGTTTTTGCTGCTGGTGATGTCCAGGATAAGAAGTATAGGCAAGCTGTTACTGCTGCTGGCACTGGGTGTATGGCAGCCTTGGATGCGGAACATTACTTGCAAGGGTTTGGTTTGCAGGAGGGTAAGAGTAAGAGTGTTTGA 1134 0.5538 MGIFPTKFFTKARNLIGLGLASAATAAASTSAAASSSSSEAEIAGRKILKTKLCIIGSGPAAHTAAIYAARAELKPVLFEGWMANGVAPGGQLTTTTDVENFPGFPAGILGPELMNRCRQQSLRFGAEVVTETVTNVDFSHRPFRVFTDSTTVEAESVVVATGAIAKRLNFDGAGDGPDGFWNRGISACAVCDGAAPIFRGRPLAVIGGGDSAMEEASFLSKFGSKVYIIHRRDKFRASKIMQGKVMSNPKIEVLWNSVVVGAYGDDKGRVLGEVKVKNVVTGVVTDLKVSGLFFAIGHEPATKFLDGQLELDSDGYVVTKPGTTKTSVEGVFAAGDVQDKKYRQAVTAAGTGCMAALDAEHYLQGFGLQEGKSKSV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0840 377 SUPERFAMILY FAD/NAD(P)-binding domain 50 364 IPR036188 -
Ssu5g0840 377 PANTHER THIOREDOXIN REDUCTASE 50 371 - -
Ssu5g0840 377 PRINTS FAD-dependent pyridine nucleotide reductase signature 317 339 - -
Ssu5g0840 377 PRINTS FAD-dependent pyridine nucleotide reductase signature 203 221 - -
Ssu5g0840 377 PRINTS FAD-dependent pyridine nucleotide reductase signature 53 72 - -
Ssu5g0840 377 PRINTS FAD-dependent pyridine nucleotide reductase signature 155 173 - -
Ssu5g0840 377 PRINTS FAD-dependent pyridine nucleotide reductase signature 290 306 - -
Ssu5g0840 377 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 50 371 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 182 194 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 251 267 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 327 345 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 111 121 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 90 105 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 52 74 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 199 223 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 292 313 - -
Ssu5g0840 377 PRINTS Pyridine nucleotide disulphide reductase class-II signature 156 164 - -
Ssu5g0840 377 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-II active site. 189 211 IPR008255 GO:0016491
Ssu5g0840 377 Gene3D - 171 302 IPR036188 -
Ssu5g0840 377 TIGRFAM TRX_reduct: thioredoxin-disulfide reductase 52 364 IPR005982 GO:0004791|GO:0005737|GO:0019430
Ssu5g0840 377 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 353 IPR023753 GO:0016491
Ssu5g0840 377 Gene3D - 55 363 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0840 Ssu-Chr5 21830110 21832257 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0840 K00384 - gmx:100794363 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0840 5 21830110 21832257 Ssu5g0840 5 21830110 21832257 ECH
Ssu2g2138 2 77184213 77193946 Ssu5g0840 5 21830110 21832257 PCT