LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0839	ATGGACGTTCGCCGGCGACCCCTCCCCGCCTCCGGCGACCGCCTCAAAACCCAGAAGCTGAAGCACCCCACCACCACGGAAACCCTCCTCCCTCTCTACCTCACCAACGCCCTCTTCTTCGCCCTCTTCTTCTCCGTCGCCTACTTCCTCCTCCATCGCTGGCGCGAGAAGATCCGCACCGCCACCCCCCTCCACGCCGTCACCCCCACCGAAACCGCCGCCATCGTCTCCCTCGTCGCCTCCGCCGTCTACCTCCTCGGCTTCTTCGGCGTTGCCTCCCGCGCCTCCCTCGACGACCTCTCCGACGACGAAGCCATCCTCAAAGAAGACTCCCGCGCCCCGGGCCCCTGTCCCGCGGCACTGGTCGACTCTTCCTTGACAGAGGAAAAAGAAGTTCCCCTGCCACACAAAACTGTCGACAGCCTGGCAAAGGAGTTTAAGACTAATGCTGACGTGGCGGCAGCGCCGATTTCCTTGTCTTCCGAAGACGACGAGGAGATCGTGGAGGCGGTGGTGTCGGGGTCGGTGCCGTCGTACTCCCTGGAATCTCGGCTCGGGGAGTGTCGGCGGGCGGCGGCGATTCGGCGCGAGGCGGTGCAGCGGCTGACAGGGAGGTCGCTGGAGGGGTTGCCGGTGGCCGGGTTCGACTACGAGTCCATACTGGGGCAGTGCTGCGAGATGCCGATAGGGTTTGTGCAGATTCCGGTGGGGGTGGCGGGGCCGTTGTTGTTGGATGGGAAGGAATACACTGTGCCTATGGCCACCACCGAGGGGTGTCTCGTTGCGAGCACCAACAGAGGTTGCAAGGCTATTTACGTTTCCGGCGGAGCTTCCTCTGTGTTGCTCAGGGATGGCATGACCAGAGCACCCGTTGTTCGGTTACCCTCTGCGCAACGTGCCGCGAAGTTGAAGTTCTTCTTGGAGGATCCTCTCAGTTTCGATTCACTTGCCGTCGTTTTCGACAAGTCAAGTAGATTTGCTAGTTTACAGAGTATTCAGTGTGCTATTGCGGGCAAGAATTTGTACATGAGATTCCGTTGCAGCACTGGTGATGCCATGGGGATGAACATGGTATCAAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGAGTGACTTCCCTGACATGGATGTTATTGGTATCTCTGGAAATTTCTGTTCGGACAAGAAAGCTGCAGCTGTGAACTGGATTGAAGGGCGTGGCAAGTCTGTGGTGTGTGAGGCTATAATTAAGGAGGATGTGGTGAAGAAGGTATTGAAGACTAGTGTGGAGGCCCTCGTCGAGCTTAACATTCTTAAAAACCTTACTGGCTCAGCCGTGGCTGGTGCTCTTGGTGGGTTCAATGCGCATGCCAGCAATATTGTGTCTGCTATCTTCATTGCCACTGGTCAGGATCCTGCTCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTCAATGATGGCAAGGACCTTCACATTTCCGTGACCATGCCCTCGGTTGAGGTACAGTCGTTTCTCCGGTCTTAA	1518	0.5685	MDVRRRPLPASGDRLKTQKLKHPTTTETLLPLYLTNALFFALFFSVAYFLLHRWREKIRTATPLHAVTPTETAAIVSLVASAVYLLGFFGVASRASLDDLSDDEAILKEDSRAPGPCPAALVDSSLTEEKEVPLPHKTVDSLAKEFKTNADVAAAPISLSSEDDEEIVEAVVSGSVPSYSLESRLGECRRAAAIRREAVQRLTGRSLEGLPVAGFDYESILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYVSGGASSVLLRDGMTRAPVVRLPSAQRAAKLKFFLEDPLSFDSLAVVFDKSSRFASLQSIQCAIAGKNLYMRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEDVVKKVLKTSVEALVELNILKNLTGSAVAGALGGFNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSVEVQSFLRS	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0839	505	Pfam	Hydroxymethylglutaryl-coenzyme A reductase	192	499	IPR002202	GO:0004420\|GO:0015936
	Ssu5g0839	505	Gene3D	-	235	500	IPR023074	GO:0004420
	Ssu5g0839	505	Gene3D	-	285	401	IPR009023	-
	Ssu5g0839	505	Gene3D	-	153	234	IPR023282	GO:0004420
	Ssu5g0839	505	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	342	360	IPR002202	GO:0004420\|GO:0015936
	Ssu5g0839	505	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	487	505	IPR002202	GO:0004420\|GO:0015936
	Ssu5g0839	505	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	251	271	IPR002202	GO:0004420\|GO:0015936
	Ssu5g0839	505	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	224	245	IPR002202	GO:0004420\|GO:0015936
	Ssu5g0839	505	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	382	407	IPR002202	GO:0004420\|GO:0015936
	Ssu5g0839	505	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	433	459	IPR002202	GO:0004420\|GO:0015936
	Ssu5g0839	505	PANTHER	3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE	1	500	IPR002202	GO:0004420\|GO:0015936
	Ssu5g0839	505	CDD	HMG-CoA_reductase_classI	165	499	IPR004554	GO:0004420\|GO:0005515\|GO:0008299
	Ssu5g0839	505	PANTHER	3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE	1	500	-	-
	Ssu5g0839	505	SUPERFAMILY	NAD-binding domain of HMG-CoA reductase	285	401	IPR009023	-
	Ssu5g0839	505	SUPERFAMILY	Substrate-binding domain of HMG-CoA reductase	156	499	IPR009029	GO:0015936\|GO:0016616
	Ssu5g0839	505	ProSitePatterns	Hydroxymethylglutaryl-coenzyme A reductases signature 1.	344	358	IPR023076	GO:0004420
	Ssu5g0839	505	ProSiteProfiles	Hydroxymethylglutaryl-coenzyme A reductases family profile.	164	499	IPR002202	GO:0004420\|GO:0015936

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0839	Ssu-Chr5	21766190	21768455	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0839	1	499	Lipid Metabolism Gene Families	AT1G76490	65.660	0.0	681

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0839	K00021		-	gmx:100811237	818.15

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2139	2	77204151	77209972	Ssu5g0839	5	21766190	21768455	ECH
	Ssu5g0839	5	21766190	21768455	Ssu5g0839	5	21766190	21768455	ECH
	Ssu2g2139	2	77204151	77209972	Ssu5g0839	5	21766190	21768455	PCT