Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2139 ATGGCGAACGATGTGATAGTAGTGATTGACAAGTCGATTGTGATTGTCATTCAAGATGCACATTGCTGCTATATGAGTATGAGAATAAAAGATATGAAAGGCAAAAGTGACATCATCGAGAATATGGACCCGCAGTCCCCGCCGCAGTCATACCTGACGAACGCCGTCTTCTTCAGCCTCTTCTTCTCGGTGGCGTACTTCCTCCTCCACCGATGGCGCGAGAAGATCCGCACCTCCACCCCACTCCACGTGGTCACGCTCTCCGAGGTGGCCGCCATCGTGTCCCTCATCGCCTCCGTCATCTACCTCATGGCCTTCTTCGGCATTGCCTTCATCCTCCACCCCTTCCTCAGCTCCCGCTCCCCCTCCGACGACGACCTCGACCTCCTCGAGCACCACACCCCCTGCCCCGCCAAGCTCCCCCCCTCCCCGCTCCCACGCGTCAACGGCGACGACGACGACGAGGAACTCAACGATTTTCCAGACATGGATGTTATTGGGATATctggGAATTTTTGTTCGGATAAGAAAGCTGCGGCGGTGAACTGGATTGAGGGGCGCGGGAAGTCGGTGGTGTGCGAGGCTGTGATTAAGGAAGAGGTGGTTAAGAAGGTGTTGAAGACTAGCGTGGGGGCTTTGGTTGAGCTTAACATGTTGAAGAATCTTACTGGCTCTGCTGTGGCTGGTGCTCTTGGTGGGTTCAACGCTCATGCTAGTAACATCGTTTCTGCTGTCTTCTTGGCCACTGGACAGGATCCTGCTCAGAATGTGGAGAGTTCACACTGCATAACTATGATGGAAGCGGTGAACGACGGCAAGGACCTTCATATTTCTGTCACTATGCCTTCGGTTGAGGTGGGTACAGTTGGAGGGGGCACGCAATTGGCGTCTCAGTCAGCTTGTCTTAATTTACTCGGGGTTAAGGGTGCCAGCAAAGAGTCCCCAGGTGCAAATTCTGGGCTACTGGCAACCATAGTGGCTGGTTCAGTCCTCGCAGCGGAACTCTCACTCATGTCTGCAATTGCAGCAGGGCAGCTTGTTAATAGCCACATGAAATACAACAGATCTACTAAGGATGTCACCAAAGTTATCTCTTGA 1098 0.5291 MANDVIVVIDKSIVIVIQDAHCCYMSMRIKDMKGKSDIIENMDPQSPPQSYLTNAVFFSLFFSVAYFLLHRWREKIRTSTPLHVVTLSEVAAIVSLIASVIYLMAFFGIAFILHPFLSSRSPSDDDLDLLEHHTPCPAKLPPSPLPRVNGDDDDEELNDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVGALVELNMLKNLTGSAVAGALGGFNAHASNIVSAVFLATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSVEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSGLLATIVAGSVLAAELSLMSAIAAGQLVNSHMKYNRSTKDVTKVIS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2139 365 Gene3D - 178 358 IPR023074 GO:0004420
Ssu2g2139 365 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 158 365 - -
Ssu2g2139 365 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 181 344 IPR009029 GO:0015936|GO:0016616
Ssu2g2139 365 Pfam Hydroxymethylglutaryl-coenzyme A reductase 158 355 IPR002202 GO:0004420|GO:0015936
Ssu2g2139 365 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 274 295 IPR002202 GO:0004420|GO:0015936
Ssu2g2139 365 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 169 194 IPR002202 GO:0004420|GO:0015936
Ssu2g2139 365 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 220 246 IPR002202 GO:0004420|GO:0015936
Ssu2g2139 365 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 286 293 IPR023076 GO:0004420
Ssu2g2139 365 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 158 355 IPR002202 GO:0004420|GO:0015936
Ssu2g2139 365 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 158 188 IPR009023 -
Ssu2g2139 365 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 340 353 IPR023076 GO:0004420
Ssu2g2139 365 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 158 365 IPR002202 GO:0004420|GO:0015936
Ssu2g2139 365 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 43 138 IPR002202 GO:0004420|GO:0015936
Ssu2g2139 365 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 43 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2139 Ssu-Chr2 77204151 77209972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2139 158 361 Lipid Metabolism Gene Families AT1G76490 87.255 1.44e-122 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2139 K00021 - gmx:100790033 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2139 2 77204151 77209972 Ssu5g0839 5 21766190 21768455 ECH
Ssu2g2139 2 77204151 77209972 Ssu2g2139 2 77204151 77209972 ECH
Ssu2g2139 2 77204151 77209972 Ssu5g0839 5 21766190 21768455 PCT