Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0818 ATGGGTAACCTTCCTGTTGTAATTATCCCTGCTATCTGTGATGAGAAAGGAGGTCCATTTGATGCACCTGATGATTGCCACAACAGGGCTCTCTCTTATTCCTTTTGCTCTTTGGCGCTTGGTGGTGTCTTCGTCTGGACCTATACTTATCAACTAATGCGAAACACATCCATGAGATACAAGGCATTTGAGGCTGCTGAGATTTTAAAGATTCCCAACAAAGACCTTGATGCTAATGCAAAAACTCGCCTTATCAAGCAAAATGATGGTTACATCAGAGACACTGAGAATCAAATTGTTGTAGACCAAGGTCCGTccattataacaaaaaatatggaaaaatcTTTTTGGCATAAAATGATGGAAACTATAGGGCAAATTCTTGCAGAACTAATGTCACCCCCAACAATTGCTACATTTCTAGGTTTCCTCTTTGGTGGGGTTAAATGGCTAAGAAACCTAATAATAGGACACGATGCTCCACTACAAGTGATCCAAGACTCCATTCAAGTGCTAGGGGATGGTACAATTCCTTGTATCACATGTTTGCTTGGTGGCAACCTTACACAAGGTACCATGGCTCAACTATTTGATGTAGGCACTGAAGAGTTTTCAGTTATTCTCTTGTGGACATATGGAGCAGCAACTATAGCTCTCACTCGTAGTGAATGGGCAAAATATGCAGATATAGACATTGATGTAATAGTGATGGTGATCATGTATATGGGTTAG 732 0.3962 MGNLPVVIIPAICDEKGGPFDAPDDCHNRALSYSFCSLALGGVFVWTYTYQLMRNTSMRYKAFEAAEILKIPNKDLDANAKTRLIKQNDGYIRDTENQIVVDQGPSIITKNMEKSFWHKMMETIGQILAELMSPPTIATFLGFLFGGVKWLRNLIIGHDAPLQVIQDSIQVLGDGTIPCITCLLGGNLTQGTMAQLFDVGTEEFSVILLWTYGAATIALTRSEWAKYADIDIDVIVMVIMYMG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0818 243 Pfam Membrane transport protein 1 191 IPR004776 GO:0016021|GO:0055085
Ssu5g0818 243 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 1 191 - -
Ssu5g0818 243 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 192 221 - -
Ssu5g0818 243 PANTHER - 1 191 IPR045033 GO:0080162
Ssu5g0818 243 PANTHER - 192 221 IPR045033 GO:0080162
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0818 Ssu-Chr5 21138773 21142207 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0818 K24139 - gmx:100787850 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0818 5 21138773 21142207 Ssu5g0818 5 21138773 21142207 ECH
Ssu2g2147 2 77412030 77415897 Ssu5g0818 5 21138773 21142207 PCT