Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0803 ATGTTTGTGAAGAAACTCGTAGAGAAAGCTTCCATAAAGAAGACTGGTGGAACTTCATCAGATGGGTTAAAAGCTAGTGATGTAGATCCACGGTTGGTATTTCATCATGGGGTGCCATCTGGTGGTGCCAAGTTCGCCTATGACACCATTCAGAGGATACTGGCTCTTTCTACTAAGGATGGCCAGATTAAACTCTATGGAAAAGATAATACTCAAGCCATGCTTGAATCTAGTGAGGCCTTGCCTAGCAAGTTTCTACAGTTCATCCAGAACCAAGGTGTCCTTATAAATGTCACTTCCAATAACCATATTGAGGTTTGGGACATAGACAAGAAACAGTTGTCTGATGTGTACATTGCTAAAGAAGAAATCACTTGCTTTGCAGTCATTCAACATAGCCTCTACATGTACATTGGGCATTCTAATGGCAATATTTCAGTTTTGAAACTTGATCAAGAACCATCATGGCATTTGGTTCAGATGAAATACACCATACCTCTCTCAGCTTCCTATGGAAACTCTGAAATGCCTAATGAGACTGTTGTGACGCATATATTGCCTCAACCAGCAGCTGAAAGTAAGAGGGTTCTCATAATCTTTAGAAATGGCCAAACGATATTATGGGATATTCGGGAAAGTAGATCTATTTTCAGAACGGGTGGAAATATGTTGCAGCCACtgcataatgaaataaaaaaagtgacttCTGCATGTTGGGTGTGTCCTTTTGGAAGTAAAGTGGTCGTAGGGTACAACAATGGAGAGCTCCTCACTTGGAGCATCCCTTCACTAAATATGGGAAATGGTTCAGCATCTGAACATAGTAATCAAAACACTCCTTTACTCAAACTTAACTTAGGATACAAGTCAGACAAAATTTCCATAGGATCAATAAAATGGGTTTATGCTGGAGGAAAGGCTAGTCGACTCTATGTTATGGGAGCTTCTGACTATGCAACTTCAAACTTGTCGCAGGTAGTGTTGTTGAATGAGCATACAGAATCTCGCACAATTAAGCTTGGACTTCATTTGTCTGAATGTTGTATTGATATGGAGATCATATCAACTTCAACTGAGCAAAGCAAGCATAAACAAGATTCTTTCATTTTGCTTGGGAAGTCAGGCCATCTATATCTGTATGACGATAGTTTGATTGAAAGGTATCTGCTACAATGCCAATCTAAGTCAACGCCTTCACTTCCAAAGGAAGGAATTGTGAAGTTGCCACTGGCAGAATCAAGCATTACAACAGCAATATTCATCTCAAACAATTCCAATGTGTTAAATTCTGAAGATGAGTATTACAGACAGCTGATCAAAAACTATCCACTGTTTGTTCCTGttgaaacaaatcaaaaagaTGGGATTAGCCTGAGTTCTGCCAAATTTACTGGATTTTCAAAAGTTCAAAACTTGTACATAACTGGACACAGCAATGGAGCCATAACCTTCTGGGATGCTTCATGCCCCATTTTCACTCCAATTTTGCAATTGAAGCAACAGAGTGAAAATGACTGTTCACTGAGTGGAATACCCTTGACAGCATTATACTTCGATAGCAACTCTCCACTTCTTGTTTCTGGTGACCAGAGTGGAATGGTTTGCATTTTTAGATTCAAACCTGAACCATATGCCACTAACAGCTTCATGTCTCTTACTGgagGTACAAAGAAAGGGACTGATCATATAATCCAAAGTGTGAAACGTGTAAAGAGTAATGGTGCCATTCTTTCAATCAACATAGATCCCAGCTCAATGCATCTTGCAGTTGGTTCTGATCAAGGACATGTTTCAGTTTTTAACACAGATGGCCCTACTTTGTTATACCAGAAACATATTGCTAGTGAAATTTCTGCTGGCATCATCTCTCTGCAGTTCCTAACCTGCAGTTTACATGGTTTTGAGAAAAACATTTTAGCAGTTGGAGCAAAAGATTCATCTGTTCTGGCACTAGATAAAGAAACTGGAAACATACTGGGCACAGGAACAATTCGCCCTAAGAAGCCCTCTAAAGCTCTATTTGTGCATGTTTTGGATGGACAAGGTGAACCGATCACTGGATCAATTACAAAGGATGGATTAGACTTGAATGAAAGGAATCATATTGACGATGCAACAACGAAGCAACAGTACATTCTGCTTTGTTCTGAGAAAGCTTTATATGTCTATTCATTAGTGCATGCGATTCAGGGGGTTAAAAAGGTGCTTTACAAGAAAAAGTTTCATTCCTCTTTGTGTTGCTGGGCATCAACATTTTACAGCCACTCTGATATTGGCCTTGTACTCATTTTCACTAGTGGAAAAGTAGAATTAAGGTCTTTGCCAGAGTTATCCCTGATTGTGGAGACTTCAATTAGAGGTTTCAGTTATTCTCCTCCAAAATCGAAGTCATTTTCTGACAGCCAGATATGTTGTTCATCCAAAGGAGATCTTGTTTTGGTGAATGGTGACCAAGAAATTTGTGTCGTCTCATTGTTGGTCCAAAGGAATATTTTCAGGCTTTTGGACTCTATTAGCAGCATCTACAGAAAAGAAATGATGCTGTCACAAGAAGAGCTTGTCCCTGGCCCAGTAATccataaggaaaagaaaaagGGTATATTCAGCTCTGTTATCAAAGATTTTACGGGCAGTAAAGAAAAGCATGCTCCCATCTTGGAAACAGAAGATTCTAAAGAAAGAATCCAGGAACTCTCAGCTAtcttttcaaatgaaaattttccatGTGATgctgataataatgataatctGACTGTTGATGAAGATAAGCTTGAATTAAACATAGATGACATTGACCTAGACGATCATGAAGAAAAACGCAAAGATCAAAGTATATTGGGAGCTCTTAATAAGAAGAAATTGACTGGAAAGCTTCAGGCTCTAAAAGGAAGATTGATAGAGATGAAGGGCAACATCCAGAAAACATCAAGTAAGGAAGAGCAACAAGATGAGCAAACAGGTGCAGTGgatcaaattaagaagaaatatgggttttcttcttcctccaaTGAAACAAGCGATGCTAAATTGGCAGAAAGCAAGCTGCAGGAGAACATGAAAAAGTTGCAGGGTATCAACATTCGAACCACAGAAATGCAAGACAAAGcaaaatcattttcatcattgGCAAACCAAGTGCTGCGGACTGCTGAACAGGAGAGACGAAATTAA 3171 0.3762 MFVKKLVEKASIKKTGGTSSDGLKASDVDPRLVFHHGVPSGGAKFAYDTIQRILALSTKDGQIKLYGKDNTQAMLESSEALPSKFLQFIQNQGVLINVTSNNHIEVWDIDKKQLSDVYIAKEEITCFAVIQHSLYMYIGHSNGNISVLKLDQEPSWHLVQMKYTIPLSASYGNSEMPNETVVTHILPQPAAESKRVLIIFRNGQTILWDIRESRSIFRTGGNMLQPLHNEIKKVTSACWVCPFGSKVVVGYNNGELLTWSIPSLNMGNGSASEHSNQNTPLLKLNLGYKSDKISIGSIKWVYAGGKASRLYVMGASDYATSNLSQVVLLNEHTESRTIKLGLHLSECCIDMEIISTSTEQSKHKQDSFILLGKSGHLYLYDDSLIERYLLQCQSKSTPSLPKEGIVKLPLAESSITTAIFISNNSNVLNSEDEYYRQLIKNYPLFVPVETNQKDGISLSSAKFTGFSKVQNLYITGHSNGAITFWDASCPIFTPILQLKQQSENDCSLSGIPLTALYFDSNSPLLVSGDQSGMVCIFRFKPEPYATNSFMSLTGGTKKGTDHIIQSVKRVKSNGAILSINIDPSSMHLAVGSDQGHVSVFNTDGPTLLYQKHIASEISAGIISLQFLTCSLHGFEKNILAVGAKDSSVLALDKETGNILGTGTIRPKKPSKALFVHVLDGQGEPITGSITKDGLDLNERNHIDDATTKQQYILLCSEKALYVYSLVHAIQGVKKVLYKKKFHSSLCCWASTFYSHSDIGLVLIFTSGKVELRSLPELSLIVETSIRGFSYSPPKSKSFSDSQICCSSKGDLVLVNGDQEICVVSLLVQRNIFRLLDSISSIYRKEMMLSQEELVPGPVIHKEKKKGIFSSVIKDFTGSKEKHAPILETEDSKERIQELSAIFSNENFPCDADNNDNLTVDEDKLELNIDDIDLDDHEEKRKDQSILGALNKKKLTGKLQALKGRLIEMKGNIQKTSSKEEQQDEQTGAVDQIKKKYGFSSSSNETSDAKLAESKLQENMKKLQGINIRTTEMQDKAKSFSSLANQVLRTAEQERRN 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0803 1056 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1055 - -
Ssu5g0803 1056 Pfam Lethal giant larvae(Lgl) like, C-terminal 730 834 IPR013905 -
Ssu5g0803 1056 MobiDBLite consensus disorder prediction 1035 1049 - -
Ssu5g0803 1056 Coils Coil 951 971 - -
Ssu5g0803 1056 CDD R-SNARE_STXBP5_6 991 1048 - -
Ssu5g0803 1056 SUPERFAMILY WD40 repeat-like 573 825 IPR036322 GO:0005515
Ssu5g0803 1056 MobiDBLite consensus disorder prediction 995 1009 - -
Ssu5g0803 1056 MobiDBLite consensus disorder prediction 973 990 - -
Ssu5g0803 1056 SUPERFAMILY WD40 repeat-like 86 648 IPR036322 GO:0005515
Ssu5g0803 1056 SMART WD40_4 110 149 IPR001680 GO:0005515
Ssu5g0803 1056 SMART WD40_4 220 260 IPR001680 GO:0005515
Ssu5g0803 1056 SMART WD40_4 560 601 IPR001680 GO:0005515
Ssu5g0803 1056 SMART WD40_4 501 538 IPR001680 GO:0005515
Ssu5g0803 1056 MobiDBLite consensus disorder prediction 1035 1056 - -
Ssu5g0803 1056 SUPERFAMILY Nucleoporin domain 180 265 - -
Ssu5g0803 1056 Gene3D - 42 307 IPR015943 GO:0005515
Ssu5g0803 1056 Gene3D - 325 689 IPR015943 GO:0005515
Ssu5g0803 1056 MobiDBLite consensus disorder prediction 972 1010 - -
Ssu5g0803 1056 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1055 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0803 Ssu-Chr5 20629402 20641459 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0803 - - gmx:100811900 1872.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0803 5 20629402 20641459 Ssu5g0803 5 20629402 20641459 ECH
Ssu2g2158 2 77530660 77541873 Ssu5g0803 5 20629402 20641459 PCT