Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2158 ATGTTCGTAAAGAAACTCGTGGAGAAAGCATCCATAAAGAAGTCTGTTGGAAATTCATCGGATGGGTTAAAAGCTAGTGATGTAGATCCTCGTTTGGTATTTCATCAAGGGATACCATCTGGTGGTGCCAAGTTTGCCTATGACAATATTCAGAAGATACTGGCTCTTTCTACCAAgGATGGGCGGATTAAACTATTTGGAAAAGATAATGCCCAAGTCCTACTCGAATCTAAAGAGCCAGTGCCTAGCAAGTTTTTACagTTCATTCAGAACCAAGGCATCCTTATAAATGTCACTTTCAATAACCATATTGAGGCAAGTGTTTGGGACATAGACAAGAAACTGCTGTCTGACGTGTACattgttaaagaagaaatcaCTTGTTTCTCAGTCATTCAACATAGCCTCTTTATGTATATTGGATTTTCTAATGGTAATATTTCAGTTTTGATGCTTGATCAAGAACCATGGCATGTGGTACGGATGAAATACACCATACCCCTTTCAGCTTCTAATGgAAATTCAACGGAAGAATCTGATGATACTGTTGTGACTAACATACTGCCTCAACCAGCAGCCGAGAGTAAGAGAGTTCTCATAATCTTTAGAAATGGTCAAATAATATTATGGGATATTCGAGAAAGCAAATCGATTTTCAGAACTGGCGGAAAAATGTCACAGACACGGTATAATGAAACAAAGAAAGTGTCTTCTGCATGTTGGGTGTGTCCTTTTGGAAGTAAGGTGGTTGTAGGGTACAACAATGGAGAACTCTTCATTTGGAGCATCCCTTCTCTAAACACAGGAAATAGTTTAGCAACTGATTATAATAGTCAAAACATTCCTATGTTCAAATTTAACTTAGGATATAAGTCAGACAAAACTTCCATAGGATCAGCAAAATGGATTTATGCTGAAGGAAAGGCCAGTCGACTGTATGTCATGGGAGCTTCTGACTATGGCCCTTCAAACTCGTTGCAGGTTGTGTTGCTGAATGAGCATACAGAATCTCGCACAATTAAGATGGGACTTCACTTGTCTGAATGCTGTATTGACATGGAGATCATATCAACATCAAGCAAGCACAgacaaaattatttcattttgctTGGAAAATCAGGCCATGTTTATCTGTATGATGATAATTTGATTGAAAGGTATCTACTGCAAAGCCAGTCTAAGTCCACTCTTTCACTGCCAAAGGAAGTGGTTGTGAAGTTACCACTGGCAGATTCAAGCATCACGACAGCAAAATTCATCTCCAACAATCCCAATGTTTTTAGTTCTGAAGATGAGTATCAGAGTCAGCCGGTCAAGAATTATCCACCGCTTATTCCCATGGAAACAAATCTCAAAGATGGGATTAACTTCAGTTCTGCCAATTTCACTGGATTTTCATACGTTAAAAACTTGTACATAACTGGACACAGCAATGGAGCCATAAATTTTTGGGATGCATCATGTCCCTTTTTCACCCCAATTTTGCAATTAAAGCAACAGagtgaaaatgatttttctttaagtgGTATCCCCTTGAcagaattatattttgatagcaGCTCTCCACTCCTTGTTTCTGGTGACCAAAGTGGGATGGTTCGTATCTATAGATTCAAACCTGAACCATATGCCTCCAACAGCTTCATGTCTCTTACTGGAGTTACAAAGAAAGGGATTGATCATGTAATCCACAATATGAAACTTGTAAAGACTAGTGGTGCTGTAATTTGCATGAACATAGATCACAGCTCAAGGCATCTTGCTGTTGGTTCTGACCAAGGAAATGTTTCAGTTATTAACATAGATGGTCCATCTTTGTTATACCGGAAACATATTGCAAGTGAAATTTCCACCAGTATCGTGTCTCTGCAGTTCAAAACCTGCAGTTTGCATGGTTTTGAGAAAAACATTTTAGCAGTTGGAACAAAGGATTCGTCTGTTCTAGCACTAGACGGTGAAACTGGAAACTCATTGGGCATTGGAACTATTCACCCTAAGAAGCCCTCTAGAGCTATATTTATGCAGGTGTTGGATGGACAAGGAGAACCAATCACAGGATCAGTTACAAAAGATGGCTTAGGCTTGAGAGAAGGGAATCGTATTGAAGATGCAACAGCAAAGCAACTGTACATTTTGCTGTGTTCTGAGAAGGCGTTGTATGTCTATTCTTTTGTGCATGCTGTACAGGGAGTTAAAAAGGTACTTTACAAAAAGAAGTTTCATTCTCTTCCTGTTGCTGGGCATCAACAATTTACAGCCTCTCTGATAGTAGTCTCATACTCCTTTTCACCAGTGGAAAAGCTTTTGGACTCTGTTAGCTGCATCTACAGGAAGGAAAGGATGCCATCACAAGAAGAGCTTGTTCCTGGCCCTGTCATccataaggaaaagaaaaagATTTTACTAGCAGTAAAGAAAAGCATGTGCCCCTcatggaaaaagaagaaagtatatggGAACTTTCAGGCAATATTCTCATATGCAAACTTTGCAtgtaatgataatgatgataagCCGACAATGGATGAAAATCAGCTTGAATTAAACATAGATGACATTGACCTAGAGGATCATGGAGAAAAACGCAAAGAACAAAGCATATTGGGAGCTCTTGATAAGAAGAAATTGGCTGGCAAATTTCGGTCTCTGAAAGGAAGATTGAAAGAGATGAAGGGAAACAACCGAAAAACATCGGATAAGGAAGGGAAACAGGATGAAAAAGATGGTGCTCTTgatcaaattaagaagaaatatggattttcttcttcctccaaTGAATCAACCGTTGCTATACGGGCACAAATCAAGCTGCATGAAAACACAAGGAAATTGCAGGGTACCGACGTTCGTGCCACAGAGATGCAAGATACAGCAAAATCATTTTCATCGTTGGCAAAACAAGTGCTGCGAACTGCTGAGCAGGATAGACGAAGTTGA 2937 0.3745 MFVKKLVEKASIKKSVGNSSDGLKASDVDPRLVFHQGIPSGGAKFAYDNIQKILALSTKDGRIKLFGKDNAQVLLESKEPVPSKFLQFIQNQGILINVTFNNHIEASVWDIDKKLLSDVYIVKEEITCFSVIQHSLFMYIGFSNGNISVLMLDQEPWHVVRMKYTIPLSASNGNSTEESDDTVVTNILPQPAAESKRVLIIFRNGQIILWDIRESKSIFRTGGKMSQTRYNETKKVSSACWVCPFGSKVVVGYNNGELFIWSIPSLNTGNSLATDYNSQNIPMFKFNLGYKSDKTSIGSAKWIYAEGKASRLYVMGASDYGPSNSLQVVLLNEHTESRTIKMGLHLSECCIDMEIISTSSKHRQNYFILLGKSGHVYLYDDNLIERYLLQSQSKSTLSLPKEVVVKLPLADSSITTAKFISNNPNVFSSEDEYQSQPVKNYPPLIPMETNLKDGINFSSANFTGFSYVKNLYITGHSNGAINFWDASCPFFTPILQLKQQSENDFSLSGIPLTELYFDSSSPLLVSGDQSGMVRIYRFKPEPYASNSFMSLTGVTKKGIDHVIHNMKLVKTSGAVICMNIDHSSRHLAVGSDQGNVSVINIDGPSLLYRKHIASEISTSIVSLQFKTCSLHGFEKNILAVGTKDSSVLALDGETGNSLGIGTIHPKKPSRAIFMQVLDGQGEPITGSVTKDGLGLREGNRIEDATAKQLYILLCSEKALYVYSFVHAVQGVKKVLYKKKFHSLPVAGHQQFTASLIVVSYSFSPVEKLLDSVSCIYRKERMPSQEELVPGPVIHKEKKKILLAVKKSMCPSWKKKKVYGNFQAIFSYANFACNDNDDKPTMDENQLELNIDDIDLEDHGEKRKEQSILGALDKKKLAGKFRSLKGRLKEMKGNNRKTSDKEGKQDEKDGALDQIKKKYGFSSSSNESTVAIRAQIKLHENTRKLQGTDVRATEMQDTAKSFSSLAKQVLRTAEQDRRS 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2158 978 MobiDBLite consensus disorder prediction 882 910 - -
Ssu2g2158 978 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 743 - -
Ssu2g2158 978 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 764 977 - -
Ssu2g2158 978 SMART WD40_4 498 537 IPR001680 GO:0005515
Ssu2g2158 978 SMART WD40_4 222 262 IPR001680 GO:0005515
Ssu2g2158 978 SMART WD40_4 400 485 IPR001680 GO:0005515
Ssu2g2158 978 SMART WD40_4 565 600 IPR001680 GO:0005515
Ssu2g2158 978 Gene3D - 34 435 IPR015943 GO:0005515
Ssu2g2158 978 CDD R-SNARE_STXBP5_6 913 970 - -
Ssu2g2158 978 Gene3D - 449 695 IPR015943 GO:0005515
Ssu2g2158 978 SUPERFAMILY WD40 repeat-like 46 608 IPR036322 GO:0005515
Ssu2g2158 978 MobiDBLite consensus disorder prediction 955 978 - -
Ssu2g2158 978 MobiDBLite consensus disorder prediction 955 969 - -
Ssu2g2158 978 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 743 - -
Ssu2g2158 978 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 764 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2158 Ssu-Chr2 77530660 77541873 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2158 - - gmx:100782049 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2158 2 77530660 77541873 Ssu2g2158 2 77530660 77541873 ECH
Ssu2g2158 2 77530660 77541873 Ssu5g0803 5 20629402 20641459 PCT