Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0790 ATGGCGTCCTCTTTACACAACTATGTTCTTGCTTTTTTACTTTTGGCCATAATCCAATTTAAAACCACATCTGCAGGTTCCTATCACCAGCACCAACACCTCAAGTCCCTTCACTTCTCGCTGTTTCAACATGAGACCATAAACAAAACCGGATATGTCATAGTGAAAGGTATAGAAGGAGGAGCAGGAATCTCTCAAACCACAACCCCTTTTGGCACCTTATTTGCCTTTCAGGACCCTTTGACTGTTACAGCCAATAGATCCTCCAAACTAGTTGGGATTGCAGAAGGGACTACCGTCACATCTAGTCTCGACGGGCTTCGAAGCATTTCAATTGCCAAGCTAACTCTGCGTTTGAAGCACCATAAGGGCTCCGTTTCCGTTGTTGGTGTCACAAATAATGTCAAACCCTCGGATCTTCCAGTGGTAGGAGGCACCgatgatttcatgtttgtgcaAGGCTATGTTACTTCTTCTCCAGTTGACCTTAAGGGTCTTACTGTTgtctacaagattgagtttcaTCTTTATTGGCCTCCATATGCAACTCACGCCTCATGA 561 0.4189 MASSLHNYVLAFLLLAIIQFKTTSAGSYHQHQHLKSLHFSLFQHETINKTGYVIVKGIEGGAGISQTTTPFGTLFAFQDPLTVTANRSSKLVGIAEGTTVTSSLDGLRSISIAKLTLRLKHHKGSVSVVGVTNNVKPSDLPVVGGTDDFMFVQGYVTSSPVDLKGLTVVYKIEFHLYWPPYATHAS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0790 186 PANTHER DIRIGENT PROTEIN 1 185 - -
Ssu5g0790 186 Gene3D - 21 176 IPR044859 -
Ssu5g0790 186 Pfam Dirigent-like protein 38 175 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0790 Ssu-Chr5 20291473 20292033 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0790 - - gmx:100817263 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0790 5 20291473 20292033 Ssu5g0790 5 20291473 20292033 ECH
Ssu2g2171 2 77692247 77692840 Ssu5g0790 5 20291473 20292033 PCT