Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2171 ATGGCATTTGCTTTGCACAACTATGCTCTTGctattttgcttttaattttggCCATAATCCCATTTGAGGGCACTTGTGGCTCCCATCACCACCACCCCCGTCACCGTCACCGCCGCGGCCGCCACCCCCACTACAAATCCCTTCACTTCTCGTTGTTTCAACATGAAACCATAAACAAAACAGGATATGTCATAGTGAATGGCGTGGAAGGAGGGGCAGGAATCACTGAAACCACAACCCCTTTTGGCACGCTTTTTGTGTTTCAGGACCCTTTGACTGCCAAAGCAAACAGATCCTCCAAACAACTTGGGACTGCAGAAGGAACTTCTATCACCTCTGGTCTTGATGGGCTTAGCAGCATTTCGGTTGCAAAGCTAACACTGCGTCTGAAGAATCACAAGGGTTCTATTTCCATTGTTGGAGGCACGAATAACCTCAAGCGTTCAGATCATCCAGTAGTAGGAGGCACTAAAGATTTCTTGTTTGTGCAAGGCTATGTTACCTCTTCTGCAATTGATGTAAAGGGTCCTACAGTTGTCTACAAGATTGGATTTCATCTTTACTGGCCTCCATATCCACCTCGAGcctcttaa 594 0.4512 MAFALHNYALAILLLILAIIPFEGTCGSHHHHPRHRHRRGRHPHYKSLHFSLFQHETINKTGYVIVNGVEGGAGITETTTPFGTLFVFQDPLTAKANRSSKQLGTAEGTSITSGLDGLSSISVAKLTLRLKNHKGSISIVGGTNNLKRSDHPVVGGTKDFLFVQGYVTSSAIDVKGPTVVYKIGFHLYWPPYPPRAS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2171 197 Gene3D - 34 188 IPR044859 -
Ssu2g2171 197 PANTHER DIRIGENT PROTEIN 1 193 - -
Ssu2g2171 197 Pfam Dirigent-like protein 49 181 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2171 Ssu-Chr2 77692247 77692840 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2171 - - gmx:100306565 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2171 2 77692247 77692840 Ssu2g2171 2 77692247 77692840 ECH
Ssu2g2171 2 77692247 77692840 Ssu5g0790 5 20291473 20292033 PCT