Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0783 ATGGCGAGAAGATCCCTACCGCTCCTTAAGCACCTCCTCTCGCGCCGGATCCCGACCCGATCCGTGACGTACATGCACCGACCGGGCGACGGGTCGCCGCGGCCGGTGACGCTGATTCCGGGCGACGGAATCGGGCCGCTGGTGACGGGGGCGGTGGAGCAGGTGATGTCGGCGATGCACGCGCCGGTGTACTTCGAGAAGTTCGAGGTGCACGGGAGGATGAAGGCGGTGCCACCGGAGGTGGTGGAGTCGATCCGGAAGAACAAGGTGTGTCTGAAGGGCGGCCTCGTGACCCCCATGGGCGGCGGCGTCAGCTCCCTCAACGTGCAGCTCAGGAAGGAGCTCGATCTCTACGCCTCCCTCGTCAACTGCTTCAACCTCCCCGGCTTGCCCACGCGCCACGACAACGTCGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCGTCCCCGGCGTCGTCGAAAGCCTTAAGGTAATAACGAAGTTCTGTTCAGAGCGCATTGCTAAATATGCATTCGAGTATGCTTACCTGAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAATATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTACCCTGGAATCAAGTATAGCGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTGACCCCAAATCTTTATGGAAATCTAGTTGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTAATGTTGGGGCTGAGCACGCCGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTGGGTGATGATAAAATAGTGGAACAAAACTCTGCCAATCCAGTGGCACTTCTTCTCTCATCAGCCATGATGCTTAGGCATCTTCAATTTCCTGCATTTGCTGACCGTTTGGAAACTGCTGTGGAACAAGTCATTCTTGAGGGCAAATACCGGACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTAATAGATGCTTTAGATTGA 1092 0.5403 MARRSLPLLKHLLSRRIPTRSVTYMHRPGDGSPRPVTLIPGDGIGPLVTGAVEQVMSAMHAPVYFEKFEVHGRMKAVPPEVVESIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYSEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGDDKIVEQNSANPVALLLSSAMMLRHLQFPAFADRLETAVEQVILEGKYRTKDLGGTSTTQEVVDAVIDALD 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0783 363 Gene3D Isopropylmalate Dehydrogenase 18 362 - -
Ssu5g0783 363 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 33 361 IPR004434 GO:0006099
Ssu5g0783 363 Pfam Isocitrate/isopropylmalate dehydrogenase 36 358 IPR024084 -
Ssu5g0783 363 SMART Iso_dh_2 35 358 IPR024084 -
Ssu5g0783 363 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 18 360 - -
Ssu5g0783 363 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 18 360 - -
Ssu5g0783 363 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 34 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0783 Ssu-Chr5 20007783 20012164 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0783 K00030 - gmx:100777867 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0783 5 20007783 20012164 Ssu5g0783 5 20007783 20012164 ECH
Ssu2g2182 2 77945312 77949454 Ssu5g0783 5 20007783 20012164 PCT