Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2182 ATGGTGACGACTCGATCCGCGCCGCTCCTGAAGCAGCTCCTCGCCCGCCTCAACCCGACCCGCTCCGTGACCTACATGCCCCGACCCGGCGACGGCGCCCCGCGCGGCGTGACGCTGATCCCGGGCGACGGAATCGGGCCCCGGGTGACCGGCGCGGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGGTGTACTTCGAGAAGTACGAGGTGCACGGCGACATGAAGGCGGTGCCGGCGGAGGTGCTGGAGTCGATCAGGAAGAACAAGGTGTGCCTCAAGGGAGGGCTCGCCACGCCCATGGGCGGCGGCGTGAGCTCGCTCAACGTGCGGCTCAGGAAGGAGCTCGATCTCTACGCTTCCCTCGTTAACTGCTTCAACCTCCCTGGCCTCCCCACGCGCCACGAGAACGTCGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAGCACGAGGTCGTTCCCGGCGTCGTCGAAAGCCTCAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTACCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGATGGCTTATTCTTGGAATCTTGTCGAGAGGTTGCTACAAGGTATCCTGGAATCAAGtataatgaaattattgtaGACAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGTATTGCTGGTGGCACTGGAGTCATGCCGGGAGGTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTGGGTAGTGAGAAAGTAGTGGAACAAAAGAAAGCTAACCCAGTGGCACTCCTCCTTTCATCAGCCATGATGCTTAGACATCTCCAGTTTCCTGCATTTGCTGACCGGTTAGAAACTGCTGTGAAACGAGTCATTCTGGAGGGCAAATACCGGACAAAGGACCTTGGAGGCACAAGCACCACCCAAGAGGTTGTCGATGCAGTGATAGATGCTTTAGATTAA 1095 0.547 MVTTRSAPLLKQLLARLNPTRSVTYMPRPGDGAPRGVTLIPGDGIGPRVTGAVEQVMEAMHAPVYFEKYEVHGDMKAVPAEVLESIRKNKVCLKGGLATPMGGGVSSLNVRLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATRYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGSEKVVEQKKANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGKYRTKDLGGTSTTQEVVDAVIDALD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2182 364 Pfam Isocitrate/isopropylmalate dehydrogenase 37 359 IPR024084 -
Ssu2g2182 364 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 34 362 IPR004434 GO:0006099
Ssu2g2182 364 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 19 361 - -
Ssu2g2182 364 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 37 363 - -
Ssu2g2182 364 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 19 361 - -
Ssu2g2182 364 SMART Iso_dh_2 36 359 IPR024084 -
Ssu2g2182 364 Gene3D Isopropylmalate Dehydrogenase 27 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2182 Ssu-Chr2 77945312 77949454 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2182 K00030 - gmx:100778831 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2182 2 77945312 77949454 Ssu2g2182 2 77945312 77949454 ECH
Ssu2g2182 2 77945312 77949454 Ssu5g0783 5 20007783 20012164 PCT