Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0782 ATGAACCATCACCCGTGTCCATTCGTTACCATGAGAAACAGCTTCAAGACCATGTTCTGGACTCGTTCTCTAAGGCTTTTCAGAGCAACTCGCATCTACTCATCTCATCATCATTCGCGCAAAATTTGTAACTTTTCCCGTGATCATGATCCGGGTTCGTGGGAATCAATGGAGGGTCTTCTTCGTTGCTCTGCAAATTTTGTGCCTTTGTCTCCCGTCGGCTTCCTAGAGAGAGCAGCGAAGGTTTGCGGAGACCGAACCTCGCTTGTGTACGGCTCTTTGGAGTATAAGTGGGGCGAAACCCATCAACGGTGTCTGAAACTTGCTTCTGCTCTGACCCAGTTGGGAATTTCACGCGGGGATGTGGTTGCCACCCTATCCCCTAATGTCCCTGCAATGTATGAGTTACATTTTGCGGTCCCGATGGCTGGAGCCATTCTTTGCACCCTTAACTCACGTCTAGATGCAGCTATGGTTTCAATCCTTCTGGAGCATTCACAAGCGAAGGTCCTTTTTGTAGACTACCAACTACTTGAAATTGCGCAGGGAGCATTGGACCTGCTAGGCAAAAAGGTTAGAGAATCGCCAATTTTAGTTCTAGTTACCGACTCTGATTTCCCATCTACCATTGACATTACATCAATTAGTTATGAGTATGAGAGGCTACTGGCTGATGGGCACAATGGTTTTGACATAGTGAGACCCCATAGTGAATGGGATCCTATAAGTATAAATTACACTTCTGGCACCACATCTAGGCCTAAAGGAGTTGTCTACAGTCACAGGGGCGCTTATCTGAACTCTCTAGCAACGGTTCAACTCTTTAGAATGGACCATTTTCCTGTTTATCTTTGGAATGTTCCAATGTTCCACTGCAATGGGTGGTGCCTCCCTTGGGGAGTGGCATCACAACTTGGGATCAATGTTTGTGTTAGGAAGGTCTCTCCAAAGAACATTTTTGACAATATAGCTCAGCATAAGGTGACACACATGGCAGGAGCACCAACAGTGCTGAACATGATTGTGAACTCTGCATTGACTGATAGAAAGCCACTCAATCACAAGGTGGTGGTGCTGACAGGAGGTTCGCCTCCGCCGCCGCAGATCCTTTCCAACATGGAGGAGATTGGCTTTAGCATCTCTCACTTGTATGGCCTCACGGAAACGTATGGTCCAGGCACTTTCTGTGCATGGAGACCTGAGTGGGACTCGTTGCCTCATGAAGAGAGATCAAAGATGAAAGCCAGGCAGGGGGTGCCCCATGTGGCTTTGGAGGAAATTGACGTGAAAGATCCTGCCACAATGGAAAGTGTTCCACCTGATGGCAAAACAATGGGGGAGGTAATGTTTAAGGGGAATACAGTGATGAGTggatattttagagatttgaaagCAACAGAAGAAGCTTTCAAAGATGGGTGGTTTCATAGTGGGGATCTAGCTGTGAAACACTCTGATGGTTACATAGAAGTCAAGGACAGATTGAAGGACATAATTATCTCTGGGGGAGAGAATATTAGCTCAGTTGAGGTAGAAACAGTTTTGTATAGCCATCCAGCAGTTCTTGAAGCTGCAGTTGTTGCCAGGCCTGATGATCATTGGGGCCAAACTCCTTGTGCATTTGTGAATTTGAAAGAGGGGTTTGATGTAGATGCTcaagaaataatcaatttttgcaGGGACCATTTGCCCCATTACATGGCTCCTAAAACAGTCGTTTTTCAAGATATACCAAAAACGTCAACAGGGAAGATACAGAAGTATGTTCTGAGGGAGAAAGCCAAGGCTTTGGGCAGCATTTCTCAACCCAaggCAACTCGCATCTACTCATCTCATCATCATTCGCGTAAAATTTGTAACTTTTCCCGTGATCATGATCCGGGTTCGTGGGAATCAAAGGAGGGTCTTCTTCGTTGCTCCGCAAATTTTGTGCCTTTGTCTCCCGTCGGCTTCCTAGAGAGAGCAGCGAAGGTTTGCGGAGACCGAACCTCGCTTGTGTACGGCTCTTTGGAGTATAAGTGGGGCGAAACCCATCAACGGTGTCTGAAACTTGCTTCTGCTCTGACCCAGTTGGGAATTTCACGCGGGGATGTGGTTGCCACCCTATCCCCTAATGTCCCTGCAATGTATGAGTTACATTTTGCGGTCCCGATGGCTGGAGCCATTCTTTGCACCCTTAACTCACGTCTAGATGCAGCTATGGTTTCAATCCTTCTGGAGCATTCACAAGCGAAGGTCCTTTTTGTAGACTACCAACTACTTGAAATTGCGCAGGGAGCATTGGACCTGCTAGGCAAAAAGGTTAGAGAATCGCCAATTTTAGTTCTAGTTACCGACTCTGATTTCCCATCTACCATTGACATTACATCAATTAGTTATGAGTATGAGAGGCTACTGGCTGATGGGCACAATGGTTTTGACATAGTGAGACCCCATAGTGAATGGGATCCTATAAGTATAAATTACACTTCGGGCACCACATCTAGGCCTAAAGGAGTTGTCTACAGTCACAGGGGCGCTTATCTGAACTCTCTAGCAACGGTTCAACTCTTTAGAATGGACCATTTTCCTGTTTATCTTTGGAATGTTCCAATGTTCCACTGCAATGGGTGGTGCCTCCCTTGGGGAGTGGCATCACAACTTGGGATCAATGTTTGTGTTAGGAAGGTCTCTCCAAAGAACATTTTTGACAATATAGCTCAGCATAAGGTGACACACATGGCAGGATCACCAACAGTGCTGAACATGATTGTGAACTCTGCATTGACTGATAGAAAGCCACTCAATCACAAGGTGGTGGTGCTGACAGGAGGTTCGCCTCCGCCGCCGCAGATCCTTTCCAACATGGAGGAGATTGGCTTTAGCATCTCTCACTTGTATGGCCTCACGGAAACGTATGGTCCAGGCACTTTCTGTGCATGGAGACCTGAGTGGGACTCGTTGCCTCATGAAGAGAGATCAAAGATGAAAGCCAGGCAGGGGGTGCCCCATGTGGCTTTGGAGGAAATTGACGTTAAAGATCCTGCCACAATGGAAAGTGTTCCACCTGATGGCAAAACAATGGGGGAGGTAATGTTTAAGGGGAATACAGTGATGAGTGGATATTTTCGAGATTTGAAAGCAACAGAAGAAGCTTTCAAAGATGGGTGGTTTCATAGTGGGGATCTAGCTGTGAAACACTCTGATGGTTACATAGAAGTCAAGGACAGATTGAAGGACATAATTATCTCTGGGGGAGAGAATATTAGCTCAGTTGAGGTAGAAACAGTTTTGTATAGCCATCCAGCAGTTCTTGAAGCTGCAGTTGTTGCCAGGCCTGATGATCATTGGGGCCAAACTCCTTGTGCATTTGTGAATTTGAAAGAGGGGTTTGATGTAGATGCTcaagaaataatcaatttttgcaGGGACCATGTGCCGCATTACATGGCTCCTAAAACAGTCATTTTTCAAGATATACCAAAAACCTCAACAGGGAAGATACAGAAGTATGTTCTGAGGGAGAAAGCCAAGGCTTTGGGCAGCATTTCTCAACCCAagggtgtaaaaaattttagttga 3561 0.453 MNHHPCPFVTMRNSFKTMFWTRSLRLFRATRIYSSHHHSRKICNFSRDHDPGSWESMEGLLRCSANFVPLSPVGFLERAAKVCGDRTSLVYGSLEYKWGETHQRCLKLASALTQLGISRGDVVATLSPNVPAMYELHFAVPMAGAILCTLNSRLDAAMVSILLEHSQAKVLFVDYQLLEIAQGALDLLGKKVRESPILVLVTDSDFPSTIDITSISYEYERLLADGHNGFDIVRPHSEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVQLFRMDHFPVYLWNVPMFHCNGWCLPWGVASQLGINVCVRKVSPKNIFDNIAQHKVTHMAGAPTVLNMIVNSALTDRKPLNHKVVVLTGGSPPPPQILSNMEEIGFSISHLYGLTETYGPGTFCAWRPEWDSLPHEERSKMKARQGVPHVALEEIDVKDPATMESVPPDGKTMGEVMFKGNTVMSGYFRDLKATEEAFKDGWFHSGDLAVKHSDGYIEVKDRLKDIIISGGENISSVEVETVLYSHPAVLEAAVVARPDDHWGQTPCAFVNLKEGFDVDAQEIINFCRDHLPHYMAPKTVVFQDIPKTSTGKIQKYVLREKAKALGSISQPKATRIYSSHHHSRKICNFSRDHDPGSWESKEGLLRCSANFVPLSPVGFLERAAKVCGDRTSLVYGSLEYKWGETHQRCLKLASALTQLGISRGDVVATLSPNVPAMYELHFAVPMAGAILCTLNSRLDAAMVSILLEHSQAKVLFVDYQLLEIAQGALDLLGKKVRESPILVLVTDSDFPSTIDITSISYEYERLLADGHNGFDIVRPHSEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVQLFRMDHFPVYLWNVPMFHCNGWCLPWGVASQLGINVCVRKVSPKNIFDNIAQHKVTHMAGSPTVLNMIVNSALTDRKPLNHKVVVLTGGSPPPPQILSNMEEIGFSISHLYGLTETYGPGTFCAWRPEWDSLPHEERSKMKARQGVPHVALEEIDVKDPATMESVPPDGKTMGEVMFKGNTVMSGYFRDLKATEEAFKDGWFHSGDLAVKHSDGYIEVKDRLKDIIISGGENISSVEVETVLYSHPAVLEAAVVARPDDHWGQTPCAFVNLKEGFDVDAQEIINFCRDHVPHYMAPKTVIFQDIPKTSTGKIQKYVLREKAKALGSISQPKGVKNFS 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0782 1186 Pfam AMP-binding enzyme 77 501 IPR000873 -
Ssu5g0782 1186 Pfam AMP-binding enzyme 653 1077 IPR000873 -
Ssu5g0782 1186 Gene3D - 496 598 IPR045851 -
Ssu5g0782 1186 Gene3D - 1072 1174 IPR045851 -
Ssu5g0782 1186 PANTHER ACYL-ACTIVATING ENZYME 2-RELATED 611 1176 - -
Ssu5g0782 1186 PANTHER ACYL-ACTIVATING ENZYME 2-RELATED 35 600 - -
Ssu5g0782 1186 PANTHER ACYL-ACTIVATING ENZYME 611 1176 - -
Ssu5g0782 1186 PANTHER ACYL-ACTIVATING ENZYME 35 600 - -
Ssu5g0782 1186 Gene3D - 638 1071 IPR042099 -
Ssu5g0782 1186 Gene3D - 62 495 IPR042099 -
Ssu5g0782 1186 ProSitePatterns Putative AMP-binding domain signature. 244 255 IPR020845 -
Ssu5g0782 1186 SUPERFAMILY Acetyl-CoA synthetase-like 54 595 - -
Ssu5g0782 1186 CDD ttLC_FACS_AEE21_like 67 592 - -
Ssu5g0782 1186 CDD ttLC_FACS_AEE21_like 643 1168 - -
Ssu5g0782 1186 ProSitePatterns Putative AMP-binding domain signature. 820 831 IPR020845 -
Ssu5g0782 1186 Pfam AMP-binding enzyme C-terminal domain 1086 1160 IPR025110 -
Ssu5g0782 1186 Pfam AMP-binding enzyme C-terminal domain 510 584 IPR025110 -
Ssu5g0782 1186 SUPERFAMILY Acetyl-CoA synthetase-like 635 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0782 Ssu-Chr5 19918725 19967833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0782 133 608 Miscellaneous Gene Families AT1G20560 62.162 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0782 - - gmx:100500429 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0782 5 19918725 19967833 Ssu5g0782 5 19918725 19967833 ECH
Ssu2g2184 2 77982436 77990593 Ssu5g0782 5 19918725 19967833 PCT