Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2926 ATGGCTAACAACGCAGCTGCCTGTGCTGAGAGAGCTACTAGTGACATGCTTATTGGTCCGGACTGGGCAATCAACATAGAGTTGTGTGATATCATTAATATGGAGCCCGGGCAAGCAAAGGATGCATTAAAGATACTTAAGAAGCGTTTGGGCagtaaaaatccaaaaatacaGCTTCTGGCTCTTTTTGTACTGGAGACCCTTAGTAAAAATTGTGGTGAAAGTGTAGTTCAGCAGATTGTCGAGCGGGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCGGACTTAAATGTGAGGGAAAAGATACTGATCTTAATTGATACATGGCAAGAAGCTTTTGGGGGCCCAACTGGAGTTTATCCTCAATACTATGCAGCATATAATGAATTAAAGTCTGCTGGAGTTGAATTTCCACCACGAGATGAGAGTAGCGTGCCATTCTTCACTCCTCCTCAAACTCAGCCAATTGTTCATTCTGCTGCAGAATATGATGATGCTGCTATTCAGGCTTCTCTTCAGTCAGATGAATCTGGCCTTAGTTTGCCAGAGATTCAAATTGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGTGCTTTGAATCCTAAAGACCCTGAgGGTGTGAAGGACGAAGTGATCGTTGACCTTGTTGACCAGTGTCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTacGGATGAGCAGCTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCCGTCGACATGATGATATTGTGAATGGAACTGCTGATTCAGGTGCTAGAGAAGCAGAAACTTCAGTTCTGTCACTTGTAAATGTAAACCATGAAGATGATGAATCAGAAGATGATTTTGCTCAACTGGCCCATAGGTCATCACGTGACACTGGTGCACAGAATCGGAAACCGGCCTTTGACAAGGAAGAACCAGGGAGGATAAACCCACTTATTCCCCCACCACCAGCATCAAGGAAACCAGTCTACTCTGGCACTGGCATGGTTGATTATCTCAGTGGTGATACATACAAGGCAGAAGGATCTCCTGAAAACTCAGAACCGACTTCATTTGCAGCTTCCCTTCATTCTAGCCCTAATCCAACCTCATCAACTATTCCATCACTGTCTTCATCTCGTCCTCATGCCATGAGTACCTCATCACCAATTTTTAGCAGCCAGCCTGTGTATGATGAACAACCATCTTCAGTGGACAAATCTTCAGAGCGTCTGCCTCCAGCTCCCTGGGACACACAATCTCCTGGTTCTGGCATCCTCCCGCCCCCACCTTCAAAGTATAATCAGAGACAACAGTTTTTTGAGCAACAACAAGGTGCATCTCATTCAAGTAGTGGATCTAGTTCCTCTTATGAAAGCTTGGTGGGACAAACTCAAAATCTCTCCCTGAATTCATCCACCCCAACCAAACAACAGAAACCAGAGGATGTCCTTTTCAAAGATCTTGTTGATTTTGCAAAATCCAAAACCTCATCATCTTCCAAACCCAATAGGTCatattga 1551 0.4352 MANNAAACAERATSDMLIGPDWAINIELCDIINMEPGQAKDALKILKKRLGSKNPKIQLLALFVLETLSKNCGESVVQQIVERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSAGVEFPPRDESSVPFFTPPQTQPIVHSAAEYDDAAIQASLQSDESGLSLPEIQIAQGLADVLMEMLSALNPKDPEGVKDEVIVDLVDQCRSYQKRVMLLVNNTTDEQLLGQGLALNDSLQRVLRRHDDIVNGTADSGAREAETSVLSLVNVNHEDDESEDDFAQLAHRSSRDTGAQNRKPAFDKEEPGRINPLIPPPPASRKPVYSGTGMVDYLSGDTYKAEGSPENSEPTSFAASLHSSPNPTSSTIPSLSSSRPHAMSTSSPIFSSQPVYDEQPSSVDKSSERLPPAPWDTQSPGSGILPPPPSKYNQRQQFFEQQQGASHSSSGSSSSYESLVGQTQNLSLNSSTPTKQQKPEDVLFKDLVDFAKSKTSSSSKPNRSY 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2926 516 SUPERFAMILY GAT-like domain 144 267 - -
Ssu1g2926 516 MobiDBLite consensus disorder prediction 302 321 - -
Ssu1g2926 516 PIRSF TOM1 1 515 IPR014645 -
Ssu1g2926 516 MobiDBLite consensus disorder prediction 440 489 - -
Ssu1g2926 516 Pfam VHS domain 9 134 IPR002014 GO:0035091|GO:0043130
Ssu1g2926 516 CDD VHS 10 135 - -
Ssu1g2926 516 Gene3D - 2 158 IPR008942 -
Ssu1g2926 516 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
Ssu1g2926 516 MobiDBLite consensus disorder prediction 302 492 - -
Ssu1g2926 516 MobiDBLite consensus disorder prediction 356 412 - -
Ssu1g2926 516 Gene3D - 175 273 IPR038425 -
Ssu1g2926 516 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Ssu1g2926 516 PANTHER TOM1-LIKE PROTEIN 1 515 IPR044836 GO:0035091|GO:0043130|GO:0043328
Ssu1g2926 516 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Ssu1g2926 516 SUPERFAMILY ENTH/VHS domain 4 142 IPR008942 -
Ssu1g2926 516 CDD GAT_GGA_like_plant 186 264 - -
Ssu1g2926 516 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Ssu1g2926 516 PANTHER TOM1-LIKE PROTEIN 4 1 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2926 Ssu-Chr1 76827045 76833239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2926 - - gmx:100792343 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2926 1 76827045 76833239 Ssu1g2926 1 76827045 76833239 ECH
Ssu5g0715 5 17664958 17677977 Ssu1g2926 1 76827045 76833239 PCT