Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0712 ATGGTTAGTTTGGCTTTGATTTGCTCTTTTAATCGAATGCGAAAGAATCTTAATCTGGGGGATGTTAAGCCGGCCGAGGTGCCCGAAGATACTGTTAAAGCTGTTGCTCAAGCTTTGAGGAATTCGGCTTTGGTCAGAGTCTCAGAAGATGGGAGCAAAGTTGGCAGGGCAACTGAACTTTTGAAGCCAGAAGAGGTAATTGAGCAGCTAGAGATAAGAACAATTGCTGCATCACCATTTGAATATGATGTGAAGCTTGAAGATGTGGAGACATTCTTTGGTCAATATGCCAAGGTTAACAGTGTTCGGTTGCCTCGCCATGTTGGAGATAAAAGGTTCTTTTGTGGCACTGCCCTTGTTGAGTTCTCATCAGATGAAGAAAtggaaaaagttttaaaacaaagtATGGTCTGTGCAGGGGCTGAGTTAGAATTAAAGCCAAAGAAGGACTTTGATGTacagagagaaaaagaattagaagaGCATGAAAAATTTCGTCCACCTGTGGGTTCAGATCACcagaataacaaaaatacagaAGCAAACTATCCTAAAGGCTTACTTATAGCCTTCAAACTAAAGAGCATTTCTGATGAAGGTCCTTTGGAACAAAATAACACTGATCAACAAGCCAATGACAGTAATGTCTCCAAAACAGATCAACAAAATCACTCTGAAATTGCTGCCAAGGAAAGTGATCAAAATATATCAGAAAATATTGACAATGATAAAGAAAACTATGGGGTGAGTGAAGGAAAGGAGACAGAAGCTGAAGAAAAGATCAAAGAAACTGATGGGAAAAATTCTGCTGTTGCTGAGAAGGACAGCAAGGGTGTTGTCTCACGTGAGGATTTGAGGGGTGTCTTTGAGAAGTTTGGAACTGTGAAGTACATTGATTTCAAGATTGGAGAAGAGTCAGGATACATTCGGTTTGAAGAACCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTTCTGAAAAGGAGGGCTTAGTTGTGAAGAATTATATTGCTACCCTAGATCCAGTGACTGGTGAGGCTGAAAGAGAATACTGGAGCCTGCTTCGTGGTAATCAAGAAAAGCTCCGAGAAAGTATGAATAACCGAGGAAGGGGAGGAAAGCATGGTAGAGGGGGCAAATTCTCCCGGTCCAGAGAGAATGAATCTGCACTACATCGCCCAAATAAAGTTAGAAAGtcataa 1206 0.398 MVSLALICSFNRMRKNLNLGDVKPAEVPEDTVKAVAQALRNSALVRVSEDGSKVGRATELLKPEEVIEQLEIRTIAASPFEYDVKLEDVETFFGQYAKVNSVRLPRHVGDKRFFCGTALVEFSSDEEMEKVLKQSMVCAGAELELKPKKDFDVQREKELEEHEKFRPPVGSDHQNNKNTEANYPKGLLIAFKLKSISDEGPLEQNNTDQQANDSNVSKTDQQNHSEIAAKESDQNISENIDNDKENYGVSEGKETEAEEKIKETDGKNSAVAEKDSKGVVSREDLRGVFEKFGTVKYIDFKIGEESGYIRFEEPEAAQKARAAAVLSEKEGLVVKNYIATLDPVTGEAEREYWSLLRGNQEKLRESMNNRGRGGKHGRGGKFSRSRENESALHRPNKVRKS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0712 401 MobiDBLite consensus disorder prediction 380 395 - -
Ssu5g0712 401 MobiDBLite consensus disorder prediction 154 181 - -
Ssu5g0712 401 Pfam RNA binding motif 279 372 IPR014886 GO:0003723
Ssu5g0712 401 Gene3D - 1 63 IPR036388 -
Ssu5g0712 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 158 IPR000504 GO:0003723
Ssu5g0712 401 MobiDBLite consensus disorder prediction 199 277 - -
Ssu5g0712 401 PANTHER BNAANNG34180D PROTEIN 1 400 - -
Ssu5g0712 401 MobiDBLite consensus disorder prediction 199 235 - -
Ssu5g0712 401 PANTHER LUPUS LA PROTEIN-RELATED 1 400 IPR045180 -
Ssu5g0712 401 Gene3D - 250 372 IPR012677 -
Ssu5g0712 401 MobiDBLite consensus disorder prediction 363 401 - -
Ssu5g0712 401 MobiDBLite consensus disorder prediction 236 277 - -
Ssu5g0712 401 SMART la 2 57 IPR006630 -
Ssu5g0712 401 SMART rrm1_1 277 335 IPR000504 GO:0003723
Ssu5g0712 401 SMART rrm1_1 74 146 IPR000504 GO:0003723
Ssu5g0712 401 MobiDBLite consensus disorder prediction 154 170 - -
Ssu5g0712 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 133 IPR000504 GO:0003723
Ssu5g0712 401 ProSiteProfiles La-type HTH domain profile. 1 66 IPR006630 -
Ssu5g0712 401 SUPERFAMILY RNA-binding domain, RBD 73 322 IPR035979 GO:0003676
Ssu5g0712 401 Gene3D - 66 164 IPR012677 -
Ssu5g0712 401 ProSiteProfiles xRRM domain profile. 262 389 IPR014886 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0712 Ssu-Chr5 17497386 17501586 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0712 K11090 - gmx:100792984 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0712 5 17497386 17501586 Ssu5g0712 5 17497386 17501586 ECH
Ssu5g0712 5 17497386 17501586 Ssu1g3308 1 85837043 85841126 PCT