Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3308 ATGGCAACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTGATACGACAGgTGGAGTTTTATTTCAGCGATAGCAACCTTCTCACCGACGGTTTTATGAGGAAGAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCTTTTAACCGAATGCGAAAGCACCTTAATTTGGGTGATGTCAAGCCCGATGAAGTGGCCCAAGATATTGTGAATACTGTTGCTCAAACTTTGAGAAATTCGGCTTCACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCCAAAGCCAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGCATCACCATTTGAATATGACCTGAAGCTTGAAGATGTGGAGAAATTCTTTGGGCAATATGCCAAGGTTAATAGTGTCCGTCTTCCCCATAATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCCCTTGTTGAATTCTCTTCAGAGGAAGAAGTAGAAAAAGTCATGAAGGAAAAATTGGTCTATGCTGGGGCTGAGTTAGAATTAAAACCAAaGAAGGACTTTGATgctgagagagaaaaagaagtaaaagattataaaaaatctCGTCCACCTGTTGGGTCAAATCAACAGAATAACTCAAATGTAGAAGAAGACTACcctaaaggcttaattattgCCTTCAAACTAAAGAGCATTTCAGATGAAATTCCTTCAgaacaaaatggtgttgatcAACAAGCCAATGACAATAGTGTTGTCTCCAAAACAGATGAAAAGAAATCCTCTGAAATTACTTCTGGGGAAAATGACCAAAAGGTAACAGTAAATGTTGACAATGATGAAGAGAAAGAAGCAAAGGAAACTGAAACTGAAGAAAACAATGAGATGAAAGAAGGAAAGGAAACTGAAAGCAAAGAAAACAATGAGATGAAAGAAGCAAAGGAAACTGAAAGTGAAGAAAACAATGAGATGAAAGAAGGAAAGATAACTGAAGGTGAAGAAAAGAATCGACAAGCTGGTGAAAAATTTTCTGCTGCTGCTTACAAGGACAACATGGATGTTGTCTCGCGTGAGGATTTGAGGAGTGTCTTTGAGAAGTTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCGGAGTCAGGATACATCCGATTTGAAGAATCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCTGTTATTTCAGAAAAGGGCGGCTTGGTTGTAAAGAATTATATTGCTACTCTAGATCCAGTGACTGGTGAGGCCGAAAGAGAATACTGGAGCCTGCTTCGTGGTAATCAAGGCAAGCACCGAGAATATAAGAGTAATCAGGGAAGGGGAGGAAGGCGTGGTAGATGGGGTAAACACGCACGCTCTAGAGAGAATGAGTCTAGAGTAGATCGCCCAAATAAGGCGCAGAAAGTTGGTTTTGCGTAA 1458 0.3916 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKSITESEDGMISLALICSFNRMRKHLNLGDVKPDEVAQDIVNTVAQTLRNSASLKVSEDGKKVGRTTELPKPEEVEQVEIRTLAASPFEYDLKLEDVEKFFGQYAKVNSVRLPHNVGDKKFFCGTALVEFSSEEEVEKVMKEKLVYAGAELELKPKKDFDAEREKEVKDYKKSRPPVGSNQQNNSNVEEDYPKGLIIAFKLKSISDEIPSEQNGVDQQANDNSVVSKTDEKKSSEITSGENDQKVTVNVDNDEEKEAKETETEENNEMKEGKETESKENNEMKEAKETESEENNEMKEGKITEGEEKNRQAGEKFSAAAYKDNMDVVSREDLRSVFEKFGTVKYIDFKIGAESGYIRFEESEAAQKARAAAVISEKGGLVVKNYIATLDPVTGEAEREYWSLLRGNQGKHREYKSNQGRGGRRGRWGKHARSRENESRVDRPNKAQKVGFA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3308 485 MobiDBLite consensus disorder prediction 463 477 - -
Ssu1g3308 485 MobiDBLite consensus disorder prediction 194 223 - -
Ssu1g3308 485 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Ssu1g3308 485 CDD LA_like_plant 10 99 - -
Ssu1g3308 485 SUPERFAMILY RNA-binding domain, RBD 361 447 IPR035979 GO:0003676
Ssu1g3308 485 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Ssu1g3308 485 Coils Coil 285 333 - -
Ssu1g3308 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 176 IPR000504 GO:0003723
Ssu1g3308 485 PANTHER OS02G0610400 PROTEIN 4 483 - -
Ssu1g3308 485 SMART la 8 100 IPR006630 -
Ssu1g3308 485 MobiDBLite consensus disorder prediction 440 485 - -
Ssu1g3308 485 PANTHER LUPUS LA PROTEIN-RELATED 4 483 IPR045180 -
Ssu1g3308 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Ssu1g3308 485 SUPERFAMILY RNA-binding domain, RBD 107 191 IPR035979 GO:0003676
Ssu1g3308 485 Gene3D - 106 199 IPR012677 -
Ssu1g3308 485 ProSiteProfiles xRRM domain profile. 340 465 IPR014886 GO:0003723
Ssu1g3308 485 MobiDBLite consensus disorder prediction 280 346 - -
Ssu1g3308 485 MobiDBLite consensus disorder prediction 244 258 - -
Ssu1g3308 485 Pfam RNA binding motif 361 453 IPR014886 GO:0003723
Ssu1g3308 485 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ssu1g3308 485 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ssu1g3308 485 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ssu1g3308 485 MobiDBLite consensus disorder prediction 209 223 - -
Ssu1g3308 485 Gene3D - 2 104 IPR036388 -
Ssu1g3308 485 Pfam La domain 14 83 IPR006630 -
Ssu1g3308 485 SMART rrm1_1 352 416 IPR000504 GO:0003723
Ssu1g3308 485 SMART rrm1_1 116 188 IPR000504 GO:0003723
Ssu1g3308 485 MobiDBLite consensus disorder prediction 244 346 - -
Ssu1g3308 485 Gene3D - 348 453 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3308 Ssu-Chr1 85837043 85841126 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3308 K11090 - gmx:100803099 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3308 1 85837043 85841126 Ssu1g3308 1 85837043 85841126 ECH
Ssu5g0712 5 17497386 17501586 Ssu1g3308 1 85837043 85841126 PCT