Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0697 ATGGCGGAACCAATGGTCGTCGAAGATGATTCCGAATACGAATTCGCGTGGGGCAAAAAGAGAGGCATGGGTGGCAAAAGGAAGGACGTGCAATTCTACGAGTCCTTCACCCTCGAAGGCGTGGTGTACTCTCTGAACGACGCCGTTTACCTCCACAACGGAAGCGGCGGCGAGCCCCACATCGGGAAGCTCATAAAGATCTGGGAGAATCGCGACAAGTCGAGGAAAGTGAAGGTGCAGTGGTTCTTCCGTCCCAGCGAGATTCGAAAGTTCTTGGAAGGGATCGAAACGAAGGAGAACGAGTTGTTCTTGGCGTGCGGTGACGGCAAGGGATTCGCCAATGTCAATCCTCTCGAAGCTATTGATGGAAAATGCAATGTTGTTTGCGTTTCTAAGGAGGTTGGGAATGCGCAACCGTCAGATGAAGCAGTTCAAATGGCTGATTTTGTGTTCTATCGTTTCTATGATGTTGGGCAATATAAAATAGTGGATAAGATCGATGACAAGAATGCTGGAACTGAAGttaaaaatattttcaacaaatGA 546 0.4744 MAEPMVVEDDSEYEFAWGKKRGMGGKRKDVQFYESFTLEGVVYSLNDAVYLHNGSGGEPHIGKLIKIWENRDKSRKVKVQWFFRPSEIRKFLEGIETKENELFLACGDGKGFANVNPLEAIDGKCNVVCVSKEVGNAQPSDEAVQMADFVFYRFYDVGQYKIVDKIDDKNAGTEVKNIFNK 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0697 181 PANTHER PROTEIN ANTI-SILENCING 1 7 181 - -
Ssu5g0697 181 ProSiteProfiles BAH domain profile. 41 166 IPR001025 GO:0003682
Ssu5g0697 181 SMART BAH_4 41 167 IPR001025 GO:0003682
Ssu5g0697 181 Pfam BAH domain 42 156 IPR001025 GO:0003682
Ssu5g0697 181 Gene3D - 10 165 IPR043151 -
Ssu5g0697 181 PANTHER PROTEIN ANTI-SILENCING 1 7 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0697 Ssu-Chr5 16823910 16825746 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0697 - - vun:114193424 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0697 5 16823910 16825746 Ssu5g0697 5 16823910 16825746 ECH
Ssu1g3324 1 86239687 86242498 Ssu5g0697 5 16823910 16825746 ECH