Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3324 ATGAAGGACGCCGTCGTCGCCCGAAACGACTTCGCCGCTGGCCATTCCGGCTACGCCGTCGCGCTCAAGAACACCGGCGCCGCCCTCAGCGACTACGCCCACGGCGAAACCCACGACCCCCACCCTCCCCCCCTCGACCCCCCGCTGCCGCCCCCGCCGCCCATCGACGAACTCCCTCCCCCCCCGCCGCTCCCCACCTTCTCCCCGGCGCCGCCGTCGCTGGCTCGCGCTGCCACCATGCCCGCTGTCGCCATGCACCACCACAGCCCCGTCCCCCTCGCCATCGccgaagaggaagaggaggaagaaaccCCCAAGCCGGCGAAGAAAACCGCCGGATCCCCGTCCCCGGCGGAGATGAAGACGCCGCCGCCCATGCCGGAGTCGAAGGGCATGACCTGGGATTATTTCTTCATGGTGGATAACATGCCTGGACCTTCTTTAAACACcgaagatgatgatgataatgataatgataatgacaaTGATGATGGGGGTAAAATGGAGAATGTGGTTGAAGATGAGGTTGAGCCCAAGACACCAGAGAAGGTGGAGGAGGAGCACGGTGATGAGAATATTCACGAGCATGAGATAAGTGAGGTGAAGAAACACATGGAGCATTCGAAGACTGCTCCAGCTGAGTTTGAGTTTAGAAGAGCGATTAAGGTGCTTCCTTCTGTTACTCTGGTGCAGATCCTCAATGTTCTCGATGATCACTTCTTGAAGGCTTCCGAGAGTGCTCAGGAAGTTACCAAGATGCTCGAGGCTACTCGGTTGCATTATCATTCCAATTTCGCGGATAATCGGGGGCACATCGATCATTCTGCTAGGCTTATGCGCGTCATAACGTGGAATAGGTCATTCAGAGGTGTGTCCAATGGGGATGCTGCCAAAGATGATTTTGATTCCGAGGAGTATGAAACTCATGCCACTGTTTTGGATAAGTTGTTGGCCTGGGAAAAGAAACTTTATGAAGAGGTCAAGCAAGGTGAGcttatgaaatttgaatatcaGAGAAAAGTTGCAATTCTGAACAAGCAGAAGAAGCGTGGTGCCAGTGCTGAATCCTTAGAAAAAACTAAAGCTGCTGTTAGTCATTTGCATACAAGATATATTGTTGACATGCAGTCGATGGATTCGACTGTTTCAGAAGTGAACCATATTCGAGATGCTCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGAGATGGCAGATATGTGGGAAAATATGTGCATACATCATGGCAGCCAGCTGAAAATAGATACAGACCTCAAATCTCTTGATATTTCTCAAGCTCCTAAGGAAACAACCAAGCATCATTACGAGCGCACTGTGCAACTTTGGAATGTCGTCCTGGAATGGCATTCACAGTTTGAGAAGCTTGTGACTCATCAAAAACAATACATCAAGGCTCTCAATAACTGGCTAAAGTTAAATCTCATTCCTATTGAAAGCAACCTAAAAGAGAAAATCTCATCCCCCCCAAAAGCCCAGAATCCACCTATTCAAGCCCTTCTCCATGCATGGCATGATTACTGTTGA 1545 0.4835 MKDAVVARNDFAAGHSGYAVALKNTGAALSDYAHGETHDPHPPPLDPPLPPPPPIDELPPPPPLPTFSPAPPSLARAATMPAVAMHHHSPVPLAIAEEEEEEETPKPAKKTAGSPSPAEMKTPPPMPESKGMTWDYFFMVDNMPGPSLNTEDDDDNDNDNDNDDGGKMENVVEDEVEPKTPEKVEEEHGDENIHEHEISEVKKHMEHSKTAPAEFEFRRAIKVLPSVTLVQILNVLDDHFLKASESAQEVTKMLEATRLHYHSNFADNRGHIDHSARLMRVITWNRSFRGVSNGDAAKDDFDSEEYETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASAESLEKTKAAVSHLHTRYIVDMQSMDSTVSEVNHIRDAQLYPKLVALVIEMADMWENMCIHHGSQLKIDTDLKSLDISQAPKETTKHHYERTVQLWNVVLEWHSQFEKLVTHQKQYIKALNNWLKLNLIPIESNLKEKISSPPKAQNPPIQALLHAWHDYC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3324 514 MobiDBLite consensus disorder prediction 163 192 - -
Ssu1g3324 514 Pfam Protein of unknown function (DUF632) 229 512 IPR006867 -
Ssu1g3324 514 Pfam Protein of unknown function (DUF630) 1 36 IPR006868 -
Ssu1g3324 514 MobiDBLite consensus disorder prediction 30 74 - -
Ssu1g3324 514 MobiDBLite consensus disorder prediction 42 70 - -
Ssu1g3324 514 PANTHER DNA LIGASE (DUF630 AND DUF632) 1 513 - -
Ssu1g3324 514 MobiDBLite consensus disorder prediction 148 162 - -
Ssu1g3324 514 MobiDBLite consensus disorder prediction 97 192 - -
Ssu1g3324 514 PANTHER UNCHARACTERIZED 1 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3324 Ssu-Chr1 86239687 86242498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3324 224 510 Acyl Lipid Metabolism Gene Families AT2G27090 27.964 4.66e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3324 - - gmx:100807189 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3324 1 86239687 86242498 Ssu1g3324 1 86239687 86242498 ECH
Ssu1g3324 1 86239687 86242498 Ssu5g0697 5 16823910 16825746 ECH