Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0663 ATGCAACCCCAGCTGAGCTCGAGAATCAATTTGGTCGAATTGAAAGCGCAGATTGTGAAGAGGATTGGAGAGGATAAGTCAAAGCGGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAAGCTGAGCAAGACTGAATTTGATAGGTCATGTTTTCGGGTACTTGGCAGGGAGAATCTTCCGTTGCACAATCactttataaaatcaattttgaagaaTGCCTGCCAAGCCAAGACCCTGCCACCGCCAGTCCAGCTGACGGGTCCTCTGAAATCAGGAGCACTTGTTAATAATGTATCTCCCGGTGGAGAGGATGGACACGAACAGAGTGTCGCTAACTTCCAAAATCAGAATGTTTCCATTTGGTCCAATGGGGTTTTGCCAGTTTCCCCACGGAAGTTAAGGTCTGGAGTGCGTGATCGGAAGCTTAAAGATAGGCCAAGCCCTCTTGGACCAAATGGAAAAGTTGATTCTGTTGCTCATCAATCCACAGCTACAGAAGACAGTGGTAGTAAGGTTGATATGGAGAATGGAGTTCTTACTCCAGGCGATTATCAGAGACCAACACAGCATCTTCAGGCAGTTTATGAGCTACCTGAGAATGGTATGGGGGATGTTATTCGAAGACCTGCCGAAAAACCAAGAATACATGGCAAAGGGCCAACTGAAGTATCAATTGTTGAAGATGGGGAAGAGGTGGAGCAGTTAAACCACCTTAGTTTCTCTAGAAGTCCCTTGATAGCACCACTTGGGATTCCTTACTGTACTGCAAGTGTTGGTGGGGCCCGGAAAGCATTGCCTGTGAATAGCGCTAGTGATTTTGTTAGTTGTTGTGACAGTGGTAGGTTACCTGATACAGATACACTGAGAAGGCGCATGGAGCAGATTGCGGCAGTACAGGGTCTTGGAGGTGTTTCTATGGAATGTTCAAATATGTTGAATAATGTGTTAGATGTGTACTTGAAACGGTTGATCAGATCTTGTGTTGATTTAGTGGGAGCTAGGTCTGCAAATGAGCTGAAGAAGCTCCCTGTCTCGAAACAGCAGATTCAGGGGAAGGTCATTAATGGCGTCTGGCCAAATAATCATTTACATGTGCAGAGTGCTGGTGGGCTGGCAGAACCTGAGCCTGAGCACAGACCACCGCACTCAGTATCTTTACATGATTTTAAAGTTGCTATGGAGCTAAATCCTCAGCAACTTGGAGAAGATTGGCCACTACAGTTGGAGAAAATTTCTATGCAATCATTTGAGGAATAA 1260 0.4476 MQPQLSSRINLVELKAQIVKRIGEDKSKRYFYYLNRFLSQKLSKTEFDRSCFRVLGRENLPLHNHFIKSILKNACQAKTLPPPVQLTGPLKSGALVNNVSPGGEDGHEQSVANFQNQNVSIWSNGVLPVSPRKLRSGVRDRKLKDRPSPLGPNGKVDSVAHQSTATEDSGSKVDMENGVLTPGDYQRPTQHLQAVYELPENGMGDVIRRPAEKPRIHGKGPTEVSIVEDGEEVEQLNHLSFSRSPLIAPLGIPYCTASVGGARKALPVNSASDFVSCCDSGRLPDTDTLRRRMEQIAAVQGLGGVSMECSNMLNNVLDVYLKRLIRSCVDLVGARSANELKKLPVSKQQIQGKVINGVWPNNHLHVQSAGGLAEPEPEHRPPHSVSLHDFKVAMELNPQQLGEDWPLQLEKISMQSFEE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0663 419 MobiDBLite consensus disorder prediction 134 148 - -
Ssu5g0663 419 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 419 IPR024738 GO:0070461
Ssu5g0663 419 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 6 332 IPR024738 GO:0070461
Ssu5g0663 419 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 1 419 - -
Ssu5g0663 419 MobiDBLite consensus disorder prediction 133 174 - -
Ssu5g0663 419 MobiDBLite consensus disorder prediction 157 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0663 Ssu-Chr5 15617283 15618542 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0663 - - gmx:100803746 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0663 5 15617283 15618542 Ssu5g0663 5 15617283 15618542 ECH
Ssu5g0663 5 15617283 15618542 Ssu1g3365 1 86879456 86880715 PCT