Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3365 ATGCAACCCCAGCAGAGCTCAAGAATTGATTTGGGTGAATTGAGAGCACAGATTATAAAGAAGCTTGGAGCAGATAAGTCGAAGCGGTACTTTTATTACTTGAACAGGTTTTTGAGTCGGAAGCTGAGCAAGACTGAGTTTGATAAGTTGTGTTTTCGAGTACTTGGGAGGGAGAATCTTCCGTTGCACAACCATTTTATAAAGTCAATTTTGAAGAATGCCTGCCAAGCCAAGACCCCGCCACCAATCCAGCCACCAGGTCCCCTGAAGTCTGGAGAACATGCTTCAGACATATCTCCTGGTAGAGAAGATGGGCATGAACACAGTGTTGCCAGCTTCCAAAATCATAATCAGAAAGCCCCTGTTTGGTCAAATGGGGTTTTGCCGGCATCCCCTAAGGTTAGGTCTGGAATACGCGATCGGAAGCTGAGAGATAGACCAAGCCCTCTTGGACCAAATGGGAAGGTTGATTCTGTTTCTCACCAATCCATGGGTACAGAAGACTGTGGTAGTAAGGTTGATATGGGGAATGGAATTCTTCCTCCATGTGATTATCAGAGACCAATACAGCATCTTCAAGCTGTTGCTGAGCTACCTGAGAATGAAAGGGGAGATGCTGTTTGGCGGCCTGCGGAAAAACCAAGAATACATGGGAAAGGACCGGCTGAAATGTCATTTGTTGAAGACGGGGAAGAAGTGGATCAGTTAAGCCACCTGGGTTTCTCTAGAAGTCCCTTGATAGCACCACTTGGGATTCCTTATTGCTCAGCAAGTGTAGGGGGAGCCCGCAAAACGTTGCCAGTGAGTAGTGCTGGTGATTTTGATAGTTGTTGTGACAGTGGTAGGTTGTCTGATACAGATACACTGCGAAGGCGCATGGAGCAGATTGCTGCAGTACAAGGTCTTGGAGCTGTTTCTATGGAATGTGCAAACATGTTGAATAATATGTTGGACGTGTACTTGAAACGGTTGATCAGGTCTTGTGTTGAATTAGTTGGAGCTAGGTCTACAAATGAGCTGAGGAAGCCCCCTGCCCCCAAACAGCAGATGCAGGGTAAGGTAATCAACGGCATGTGGCCAAATAATCATTTACACGTGCAGGGGGCTGGTGGCTCAGCAGAAGCTGTGCCTGAACACAGACCACCATGCTCAGTTTCTTTGCATGATTTTAAAGTTGCCATGGAACTAAATCCACAACAACTTGGAGAAGATTGGCCACTGCTGTTGGAGAAAATATCCATGCAATCGTTCGAGGAATAA 1260 0.4643 MQPQQSSRIDLGELRAQIIKKLGADKSKRYFYYLNRFLSRKLSKTEFDKLCFRVLGRENLPLHNHFIKSILKNACQAKTPPPIQPPGPLKSGEHASDISPGREDGHEHSVASFQNHNQKAPVWSNGVLPASPKVRSGIRDRKLRDRPSPLGPNGKVDSVSHQSMGTEDCGSKVDMGNGILPPCDYQRPIQHLQAVAELPENERGDAVWRPAEKPRIHGKGPAEMSFVEDGEEVDQLSHLGFSRSPLIAPLGIPYCSASVGGARKTLPVSSAGDFDSCCDSGRLSDTDTLRRRMEQIAAVQGLGAVSMECANMLNNMLDVYLKRLIRSCVELVGARSTNELRKPPAPKQQMQGKVINGMWPNNHLHVQGAGGSAEAVPEHRPPCSVSLHDFKVAMELNPQQLGEDWPLLLEKISMQSFEE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3365 419 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 4 332 IPR024738 GO:0070461
Ssu1g3365 419 MobiDBLite consensus disorder prediction 96 110 - -
Ssu1g3365 419 MobiDBLite consensus disorder prediction 77 167 - -
Ssu1g3365 419 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 419 IPR024738 GO:0070461
Ssu1g3365 419 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 1 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3365 Ssu-Chr1 86879456 86880715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3365 - - gmx:100799736 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0663 5 15617283 15618542 Ssu1g3365 1 86879456 86880715 PCT