Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0656 ATGGATTCCATCTACGCGAGCTCATCGTACACGGTTCCCAACCTTCTCCGTCGCGAGACTCTCTTGCTGCCGCGAACCTCGAATTCGATTCCTTCTCCGTCGCTTCGGCGAGCGAAGAAGTTGAGGCGCGCGCGGGTTTCGAGTTCCGCGGCGACGGGAAGTGGTGCGGCGTCGAACGGCGCCGTTTCGAGGGCGTTGCAGGGAGCGAGCAACACCGCGCTGGAGCAGCTCGACATCGAGCGTGGCGTCTGCATCCCCTTCCGCAAGTACTCACCCGAGCTCGTGAGGAATAAGGTATTAGAATCAAGAGGGGCTATTTTGTCACTTATGTTGCGGGGAGTGGAGATAGTTTGGAATCTGGGCTTGTACTGGTCTAACTTGGGGTATGATTTCCTGGTTGGAAGGGATGAAGAGGTTGTTCCATATCGTGCTCGACAGCTTAGGAATCTCTTGTGTGATCTGGGGCCTTCCTTTATTAAAGCTGGTCAGGTCCTTGCAAACAGGCCAGATATCATTCGAGAAGATTATATGAATGAACTCTGCATTCTTCAAGATGATGTTCCTTCATTTCCCAATCAAATTGCCTTCAGAATCATAGAGGAGGAACTGGGTCAACCCCTTGAAGCTGTTTTCAGCAGAATCTCGTCAGAGACAATAGCAGCTGCAAGTTTAGGTCAAGTTTATCGAGCTACTTTACGTGCTACTGGCGAGGATGTTGCTATCAAGGTTCAAAGGCCTGGGATAGAGCCCATTATATATCGAGATCTTTTCCTATTCCGCACTTTGGCTTCTTTCTTAAATGGCATTAGTATGCAGAAACTGGGATGTAATGCCGAGCTGATTGTTGATGAATTTGGTGAAAAGCTTTTGGAAGAGCTTGATTATACCCTGGAAGCCCGCAATCTTGAAGATTTtcttgagaattttaaaaatgacccTACTGTCAAAATTCCTCAGGTTTACAAACAATTTTCTGGTTCACGTGTGCTAGTAATGGAATGGATTGATGGTATCAGGTGCACCAATCCGCAGGCCATCAAAGAAGCTGGTATTGATGTAGGTGGATTTTTAACGATTGGAGTGAGTGCTGCCCTACGACAATTGTTGGAATTTGGATTATTTCATGGAGACCCTCACCCTGGAAATATTTTTGCCATGCGTGATGGGCGAATTGCATATGTGGACTTTGGCAATGTTGCTGTTCTCAGTCAGCAAAATAAACAGATCTTAATTGATGCTGTTGTCCACGCTGTGAATGAGGACTATGCTGAGATGGCTAATGATTTCACCAGATTAGGCTTCCTGTCACCAGGGACTGATGTCACTCCTATAATTCCTGCTTTGGAAGCAATTTGGCAGAACTCTGCTGGAAAAGGACTGTCAGATTTTAATTTTCGTAGTGTCACTGGAAAGTTTAACCAGTTGGTTTACAATTATCCCATTCGAATTCCAGAAAGGTTTTCACTTGTAATCCGTTCTTTATTGACCCAAGAAGGCATCTGTTTTACCCTGAAGCCTGACTTCAAATTTCTTGAGGTTGCCTATCCTTACGTGGCTAAGCGACTACTAACAGACCCAAATCCAGCTCTACGTGAACGCCTCATACAGGTTCTATTCAAAGATGGTCTTTTCCAGTGGAAACGGCTTGAAAACCTTATTGTTCTTGCAAAGGAAAATGTGGCCAAGATGAGCAGCAATCCAGCATTGCAAGTGAAAAACACGCAAAGCCAGAGAGActggaaagttgaaagaaaattgGACCTCACAGACACAATCAAAGATGGAGCTCGCCTTTTCTTTGTTGATGAAGGAATACGTAGACAGCTTCTTCTTGCTTTGACTGAGGACTCAAGGCTACATATTGAAGAGCTTGTAGATGTGTATAGGTTGGTTGAAGATCAGATAGACATACCCTCAGTGGCTGTAGAAGTAGCTAGAGGTAAAGTTCTTGTGAAACGTGAATATGACTTTGTTCAATTAGACTACATTATCTTTTTGACCCTCAAAATATCACCATTTTTTcatttggtccctcatttttaa 2043 0.4356 MDSIYASSSYTVPNLLRRETLLLPRTSNSIPSPSLRRAKKLRRARVSSSAATGSGAASNGAVSRALQGASNTALEQLDIERGVCIPFRKYSPELVRNKVLESRGAILSLMLRGVEIVWNLGLYWSNLGYDFLVGRDEEVVPYRARQLRNLLCDLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPSFPNQIAFRIIEEELGQPLEAVFSRISSETIAAASLGQVYRATLRATGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISMQKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFLENFKNDPTVKIPQVYKQFSGSRVLVMEWIDGIRCTNPQAIKEAGIDVGGFLTIGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLSPGTDVTPIIPALEAIWQNSAGKGLSDFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGLFQWKRLENLIVLAKENVAKMSSNPALQVKNTQSQRDWKVERKLDLTDTIKDGARLFFVDEGIRRQLLLALTEDSRLHIEELVDVYRLVEDQIDIPSVAVEVARGKVLVKREYDFVQLDYIIFLTLKISPFFHLVPHF 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0656 680 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 37 654 - -
Ssu5g0656 680 Pfam ABC1 atypical kinase-like domain 183 427 IPR004147 -
Ssu5g0656 680 SUPERFAMILY Protein kinase-like (PK-like) 184 422 IPR011009 -
Ssu5g0656 680 CDD ABC1_ADCK3-like 183 429 - -
Ssu5g0656 680 ProSiteProfiles Protein kinase domain profile. 213 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0656 680 Gene3D Transferase(Phosphotransferase) domain 1 211 414 - -
Ssu5g0656 680 PANTHER PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 1, CHLOROPLASTIC 37 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0656 Ssu-Chr5 15379740 15392757 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0656 - - gmx:100790292 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0656 5 15379740 15392757 Ssu5g0656 5 15379740 15392757 ECH
Ssu1g2641 1 71819208 71831515 Ssu5g0656 5 15379740 15392757 PCT