Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0646 ATGGGGGACGAGAAAGGCGAGAAGAAAGAAACGAGTCCCGGTGCCACTGCGGGTAACGGTAAGAAGAAGGGGTTTGTTTCGCGAATTTGGAACGGGATATTCAGGTCGAACCGTGACGATTTTGAGAAGAGGCTTGAGCATATTTCCAAAGAAGAAAACGCTGTTGTGACCAGAATGAGCAACAGATCTCGCTTCTGGAGGCGAACCTCTCGCCAGCTTATCTTGTTTTCCGCTCTGTTTGAGGTGATTGCTGTATGTTATGCTATTATGACAACAAGATCAATGGATATGAATTGGAAAATGAGGGCAATCAGAGTTTTGCCAATGTTTCTTTTGCCTGCCTTGTCATCTGCTACATATGCTACATTTCTCAGCTTCAAAAGGATGCGTGATCGCAGGGACCAGAAAATTCTTGAAAGGCTTAGAGCTGAAAGGAAGGCAAAAATTGATGAGCTCAAAGAGAAGACACATTATTACACTACTCAAAAACTCATTCAGAGATATGACACAGATCCAGCAGCACAGGCAGCTGCTGCAACTGTTTTAGCATCGAAGTTGGGTGCAGATTCGGGTTTGAAAGTGTATGTGGGGGTTGAATCTTCTGGTGCTCCGACAGGGAAGACCAAGGATGTCAAAGTTGTGCAGTCCAGTGGACTTCGAAATCGCAAACAAATGAACTCTAGATCCACTAGTCCAGGGACAACTACACCAAATTATTCTGATCAACAATTAGTTGGTTCTGGGAAAATTGATCAAACTCAAACTTCTGAGCATAACCAGCCTGTAGTTGTTGAACATCACCATCCTCAAAGTTCAACAATGAACGATGGAGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACGCAGTCTTATGCGCTTATATGCGGTAACTGCCATCTGCATAATGGTCTTGCTCGGAAGGAGGATTTCCCGTTTATCACTTATTACTGCCCACACTGTCACGCCCTGAACAAACCAAAGCAATCGGATGAGCATATATCTGGTTTAAATTCCCCAAACACTGGGTCTGCAAAAACGGATGATGGTGAAGAAGTTATAAATGCTTCTGCCTCTGCAGCTGACAGCGTAATCAGAAGCAATAATCCCGTAAATACTAGCCCTGAGATTGAGGAGGTATCTGAACGGGCTATTTCAGGGGAAGAAAGCTAG 1185 0.4456 MGDEKGEKKETSPGATAGNGKKKGFVSRIWNGIFRSNRDDFEKRLEHISKEENAVVTRMSNRSRFWRRTSRQLILFSALFEVIAVCYAIMTTRSMDMNWKMRAIRVLPMFLLPALSSATYATFLSFKRMRDRRDQKILERLRAERKAKIDELKEKTHYYTTQKLIQRYDTDPAAQAAAATVLASKLGADSGLKVYVGVESSGAPTGKTKDVKVVQSSGLRNRKQMNSRSTSPGTTTPNYSDQQLVGSGKIDQTQTSEHNQPVVVEHHHPQSSTMNDGGWIARIAALLVGEDPTQSYALICGNCHLHNGLARKEDFPFITYYCPHCHALNKPKQSDEHISGLNSPNTGSAKTDDGEEVINASASAADSVIRSNNPVNTSPEIEEVSERAISGEES 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0646 394 MobiDBLite consensus disorder prediction 335 352 - -
Ssu5g0646 394 MobiDBLite consensus disorder prediction 332 394 - -
Ssu5g0646 394 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 279 329 IPR019273 -
Ssu5g0646 394 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g0646 394 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 16 391 - -
Ssu5g0646 394 MobiDBLite consensus disorder prediction 203 275 - -
Ssu5g0646 394 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 16 391 IPR040115 GO:0071786
Ssu5g0646 394 MobiDBLite consensus disorder prediction 364 380 - -
Ssu5g0646 394 Coils Coil 135 155 - -
Ssu5g0646 394 MobiDBLite consensus disorder prediction 210 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0646 Ssu-Chr5 15106561 15117400 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0646 K23292 - gmx:100815496 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0646 5 15106561 15117400 Ssu1g3377 1 87166642 87169964 PCT