Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3377 ATGGCGGATGACAAAGTGGTTGGGGAAGGTGAGAAGAAAGAGACAAGTCCCGCTGCTGGTGACGCTGGGAATGGAAAGAAGAAGCGCAAGGGTCTTGTTTCGCGAATTTGGAATGGGATATTTAGGTTACACGGCGATGATTTTGAGAAGAGACTGCAATACATTTCTAAAGAGGAAGCTCTGGTTATGACTAGAATGAACAGGAGATCCCGATCGTGGAGGAGAATTTCCCGGCATCTTATTGTATTATCTGTCATATTTGAGGTCGTTGCTGTAGTTTATGCTATTATGACGACGAGATCAATGGATATGAATTGGAAAACGAGGGCAATCAGGGTTTTGCCAATGTTTCTTTTGCCTGCACTGGCATCTACTGCCTATACAGCATTTATCAGCTTCACAAGGATGTGTGATCGCAGGGACCAGAAAATTCTAGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAAGACAAATTATTACACTACACAACAGCTCATTCAGAGATATGATCCAGACCCAGCTGCCAAAGCAGCTGCTGCAACTGTTTTAGCATCTAAGTTGGGTGCAGATTCTGGTTTGAAAGTGTACGTGGGAGATGAATCCAATCCCGGTGCTTCAATGGGGAAGAGCAATGACGTTGAACTTGTGCAGTCCACTGGAATTCGAAATCGGAAACAAGTTCAATATAGATCCACATCCACTAGTCCAGGGACAACCACCCCAAATTCTGGTTTGCGGGGAATCGATCAAACTCAGACTTTTGAGCACAATCAGCCTGTTGTTGAACATCACCAACCTCAAAGTTCAACCACACAAGATGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCATATGCTCTCATATGCGGTAACTGCTATATGCATAATGGTCTAGCTCGGAAGGAGGATTTCCCATTTATCACATACTACTGCCCGCATTGTCATGCCCTGAACAAACCAAAGCAAATGGATGAGCGTATCTCTGGTCTTGCTTCTCCAAACATGGGGACTCCGAAAACAGACGATGGTGAGGCTGATGCCGTTAAGAATGCTAGGGCTTCTGCAGCCGAGAGCGTAATAACAAGCAGTAGTCCCGGAAGTGCTACCAGCTCTGAGATTGAGGAAGTATCAGAAAGGGCTAGTGTGGACGAGAAAGCTGATTAA 1206 0.4519 MADDKVVGEGEKKETSPAAGDAGNGKKKRKGLVSRIWNGIFRLHGDDFEKRLQYISKEEALVMTRMNRRSRSWRRISRHLIVLSVIFEVVAVVYAIMTTRSMDMNWKTRAIRVLPMFLLPALASTAYTAFISFTRMCDRRDQKILERLRAERQEKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYVGDESNPGASMGKSNDVELVQSTGIRNRKQVQYRSTSTSPGTTTPNSGLRGIDQTQTFEHNQPVVEHHQPQSSTTQDGGWIARIAALLVGEDPTQSYALICGNCYMHNGLARKEDFPFITYYCPHCHALNKPKQMDERISGLASPNMGTPKTDDGEADAVKNARASAAESVITSSSPGSATSSEIEEVSERASVDEKAD 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3377 401 MobiDBLite consensus disorder prediction 341 401 - -
Ssu1g3377 401 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 282 332 IPR019273 -
Ssu1g3377 401 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 15 397 - -
Ssu1g3377 401 MobiDBLite consensus disorder prediction 369 389 - -
Ssu1g3377 401 MobiDBLite consensus disorder prediction 1 16 - -
Ssu1g3377 401 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g3377 401 Coils Coil 142 165 - -
Ssu1g3377 401 MobiDBLite consensus disorder prediction 232 254 - -
Ssu1g3377 401 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 15 397 IPR040115 GO:0071786
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3377 Ssu-Chr1 87166642 87169964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3377 K23292 - gmx:100797087 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0646 5 15106561 15117400 Ssu1g3377 1 87166642 87169964 PCT