Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0645 atgaCTAGGCCAACAACtcgaagtaaaaataaaaggcagAGACAGGGGGATGATGATGGCAGCACTTCTGAAATATGGAGGAAAATTCACAAAACAGGTGTGGTGACTGAAGATGATATGAACCAACTGTATATGATTTGGAAGCCGGTCTGTTCAGGCTGTCGTGTTAATACTAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCACCTACAAATGGTACCCGGAAGTCTGGCTTATGGCAGAAGATGTCTGACTTTGTTGAAAGTCTTGGCCCCGACCCAAATACAGATCTTCGTGCTTCTGCTAGTTCACCTGCAGGTCTGACAAATCTTGGTGCAACATGCTATGCCAACAGTATACTACAGTGCTTGTACATGAATAAATCTTTCCGAGAAGGCATATTTTCTGTAGAACCAGATGTTTTACAACAACAACCAGTGTTAGATCAACTGAGTCGGCTTTTTGTACAGTTGCATGCTTGTAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAGTTAGACAATGGAGTTCAGCAGGATAGCCACGAGTTCCTGACATTGCTTCTGTCATTACTCGAGAGTTGTTTGAGCCATTCCAAAATTACCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGAGGAAGTGTGTCTCATGTGACAACGTGTTCGCAATGTGGAAGAGACTCTGAGGCTTCTTCCAAAATGGAAGACTTCTATGGGTTAGAGTTGAATATCAAGGGACTGAAAGGTTTAGATGAGAGCCTAGATGATTACCTCGCTATTGAAGAGCTTCATGGagacaatcaatatttttgcgAGTCATGTAAAACAAGAGTCGATGCTACTCGCAACATCAAGCTGTGTACATTACCTGATGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCACAGAATACAATGAAGAAGAAAGTTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGCCATAGATTGTCTGAGCCATCTCAGTTTGAATTGATATATGACTTGTCAGCTGTACTGATTCACAAAGGAACTGCTGCTAATAGTGGTCATTACATTGCCCATATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGACGAGCATGTTACTAACTTGGGTTGTCATCCATTTGGGGAAGAAGCTTCATCTTCTACTTCTAAATCTGTTAAGACAGATGTACTTCATTCTAATTACTCTGAAGCAATGCTAGCAGACAGTAATGGAAATGGTTTAGATGCCACTCATTCACAATCTTCACTTGTGGAGACATTTTCATCTAGTGATGCATACATGTTGATGTACCATCTTAAGCACAGCAAAAATGTTGGTGAAAAGGGGGGCATGGTTTATGGTGCTAACCTTAAAGAAGTAGAGGGCAGTGCAGTTACTGCGCAAGACAGTGCTTGTCTTCCTTCTCATCTTTGTGAAGagattcaaaatttcaattcctCATATCTTGATTCTTGCGAGCAGTACAAGCGTAGGAAAAAGTTAGAACTGAGTCGTATCAATGAGAGGAGACAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTATTCAACCACTGGAACAACCATTTTTTTGGATTTGTAGTGACTGGCTTCGCCAGTGGGCTGACAACATTATTCCAATTGCTCTTGACAATACATGTATCCAATGCTCACATGGGAAAGTCCCAGTGTCAAAGGTTACCTCAATGAAGCGATTATCTTCTAAAGCATGGGATAAATTGTTGTCTAAGTATGGTGGGGGACCAACTCTTTCTCATGATGACTGCTGTTGGGATTGTCTGATTGATGGGGCTCAAAATATGGTGTCAGCTGACACCTACCGGGATCAAAGAGAATCATTGAAGCAACTTGCACGGGATATTCTTGATGGAAATTGTGAAGATGGAATGTTCTATGTTTCTAAACCATGGTTGCAGCAATGGTGGAAAAGAAAAGTTGTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCCATTAGTTGTCCACACGGGCAACTTATGCCTGAACAAGCTGTGGGTGCTAAGCGATTGCTTGTTCCTGAGGGTTTGTGgcttttcttatataaagatgCCATTTCTGTAAAACCTGATGATCCTCTAGGTTGCCCTACTTTTCCTTTAGATTCCAGAGAGTGTTCCCAATGCAGTGATGAATTATCTGAAGTGGCTTGCTTGGAGGACTCTTTGAGATTAGTAAAACAAAGGCAGCGCCAAAATCATGAGAAATTATTTGTTGGTAAAAGTATGCCGCTTTCTCTACATTGCAAGTATTTCTTAGTTCCTTCTTCGTGGATTTCAAAATGGAGAAATTACATTAATGTGGCTGTCAAGAATTCAGATAAACCTGAAACTTTAGATGGGGTAATTGATTCACTGATGTGTGAGAAGCACTCACAGCTCATTGAAAGGCCTCCTGAACTGGTTTTCAGACGCGGTGCTATAATCCCAAGAGAATCTTCTGTAGGTAGCTTAACCATCATATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGTGGTATTGAGACCAAAGGAATATCTGCAAGAATTGAGaatattaatgatttagaaaatgctTTCACTGGATCCTGCAAAGAGATGCCAATATGTGAGGATCAGCTTCACACTTGGGATAAAGTGAATAATGAAAGTGGGAATGGACAAATTGTGATTAAGACTTGTCCTGAGGTTTGTGAAAGTTGCGTTGGAGAAAAGGAAAGCTGTGAGTTAATGCACAAACTTAACTATAGCAATGAGGACATTAGTGTAATTCTTGTCCGTGGAAAGGAGGTCCCCAGATCAATCTTGGAGGCTTCAAAGGGCTTTGTTGAAACAGACAGGCGAGTTTCCAAACGTTCACGGAAGACTAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACGTCACTTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAATCAGATACTACAAAAAGGTGATAGAACAATTGATGTTGATGACGAATGTGCTACGCTTGCGGATGTAAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCAGATGAGCTTTGTGATGAGAAAATGGAAACCCAACATACCGAGGCAGGGTTTCGTGGAACACTCTTAACATCGAATGTTTCATCTCAGGTTGTTTAG 3252 0.3979 MTRPTTRSKNKRQRQGDDDGSTSEIWRKIHKTGVVTEDDMNQLYMIWKPVCSGCRVNTKDNPNCFCALVPPTNGTRKSGLWQKMSDFVESLGPDPNTDLRASASSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPDVLQQQPVLDQLSRLFVQLHACKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLESCLSHSKITKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYGLELNIKGLKGLDESLDDYLAIEELHGDNQYFCESCKTRVDATRNIKLCTLPDVLNFQLKRYVFLPQNTMKKKVTSAFSFPAELDMRHRLSEPSQFELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEHVTNLGCHPFGEEASSSTSKSVKTDVLHSNYSEAMLADSNGNGLDATHSQSSLVETFSSSDAYMLMYHLKHSKNVGEKGGMVYGANLKEVEGSAVTAQDSACLPSHLCEEIQNFNSSYLDSCEQYKRRKKLELSRINERRQEVRSVLAEAPIQPLEQPFFWICSDWLRQWADNIIPIALDNTCIQCSHGKVPVSKVTSMKRLSSKAWDKLLSKYGGGPTLSHDDCCWDCLIDGAQNMVSADTYRDQRESLKQLARDILDGNCEDGMFYVSKPWLQQWWKRKVVDAPSEADAGPTAAISCPHGQLMPEQAVGAKRLLVPEGLWLFLYKDAISVKPDDPLGCPTFPLDSRECSQCSDELSEVACLEDSLRLVKQRQRQNHEKLFVGKSMPLSLHCKYFLVPSSWISKWRNYINVAVKNSDKPETLDGVIDSLMCEKHSQLIERPPELVFRRGAIIPRESSVGSLTIISENDWKCFCEEWGGIETKGISARIENINDLENAFTGSCKEMPICEDQLHTWDKVNNESGNGQIVIKTCPEVCESCVGEKESCELMHKLNYSNEDISVILVRGKEVPRSILEASKGFVETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILQKGDRTIDVDDECATLADVNIFAGDQIIVRDSEIHENRDIADELCDEKMETQHTEAGFRGTLLTSNVSSQVV 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0645 1083 Gene3D Cysteine proteinases 94 450 - -
Ssu5g0645 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Ssu5g0645 1083 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Ssu5g0645 1083 ProSiteProfiles DUSP domain profile. 621 723 IPR006615 GO:0004843
Ssu5g0645 1083 ProSiteProfiles DUSP domain profile. 514 606 IPR006615 GO:0004843
Ssu5g0645 1083 SMART dusp 532 603 IPR006615 GO:0004843
Ssu5g0645 1083 CDD Ubl_USP48 973 1076 IPR044743 GO:0004197|GO:0004843|GO:0016579
Ssu5g0645 1083 SUPERFAMILY Cysteine proteinases 106 450 IPR038765 -
Ssu5g0645 1083 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1053 - -
Ssu5g0645 1083 MobiDBLite consensus disorder prediction 1 24 - -
Ssu5g0645 1083 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1053 - -
Ssu5g0645 1083 Gene3D - 972 1043 - -
Ssu5g0645 1083 Gene3D - 745 866 IPR035927 -
Ssu5g0645 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Ssu5g0645 1083 ProSiteProfiles DUSP domain profile. 749 869 IPR006615 GO:0004843
Ssu5g0645 1083 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Ssu5g0645 1083 MobiDBLite consensus disorder prediction 10 24 - -
Ssu5g0645 1083 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Ssu5g0645 1083 SUPERFAMILY DUSP-like 517 605 IPR035927 -
Ssu5g0645 1083 SUPERFAMILY Ubiquitin-like 976 1042 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0645 Ssu-Chr5 15089294 15098294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0645 86 385 Miscellaneous Gene Families AT4G31670 30.189 2.20e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0645 - - gmx:100795556 2031.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0645 5 15089294 15098294 Ssu1g3378 1 87202067 87212696 PCT