Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3378 ATGCTATTCTCATTTCTCAGGGCTAGGTTGTACTTGTGTTATAGAATGAGCAGACCCACAACgcgaagtaaaaataaaagacagaGACAAGGGGATGATGGCACTGGCACTGGTGAAATATGGAGGAAAATTCACAATACCAGTGTGGTAACTGAGCATGATGTGAATCAACTGTATATGATTTGGAAGCCAGTTTGTTCAGGCTGTCGTGTCAACAGCAAAGATAACCCAAATTGCTTCTGTGCGTTGGTTCCACCTCAAAATGGAGCCCGGAAGTCTGGCTTATGGCAAAAGATGTCAGATATTGTTGAAAGTCTTGGCCATGACCCAACCAAGGATCTTCGTGCTTCTGCGAATTCTCCTGCAGGTCTCACAAATCTTGGTGCAACATGTTATGCCAACAGTATACTCCAGTGCTTGTACATGAATAAATCTTTCCGAGAAGGCATGTTTTCTGTAGAACCAGATGTTTTACAACAACAGCCTGTGCTAGATCAGCTGGCTCGACTTTTTGTGCAGTTGCATGTTAGCAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTCTCTTTGCTTGAGCGTTGTCTGAGCCATTCCAAAGTGCCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGATTTTTATGAATTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCCTAGATGAATATCTCACTATTGAAGAGCTTAATGGagacaatcaatatttttgtgaGTCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCCAAAGTACTTAATTTTCAGCTTAAACGTTATGTCTTCCTTCCAAAGActacaacaaagaagaaaattactTCCGCATTTTCATTTCCTGCTGAACTTGATATGCGTCATAGAATGTCTGAGTTGTCTCAGTTCAACTTGGTATATGACTTGTCTGCTGTACTTATTCACAAGGGAACTGGTGCTAACAGTGGCCATTACATTGCTCACATCAAGGATGTAAACACGGGACAATGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTGTCATCCATTTGGCGAAGGGTCTTCAAGTTCTACTACTAAATCAATTAAGAATGATGCAATTCATTCTGATAGTTCTGAAGCAATGATAGCTGACAGTAATGGAAATGGTTTAAATGCTACTCATTCACAATCTTTGCATGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATcttaaacatacaaaaaatgTAGGTGAAAGTGGGGGTGTAATTTGCGGTGCTAACCATAAAGAAAGAGAGGGTGTTTCAGTTGCTGTGCAAAATGGTGCTCCTCTTCCATCTCATCTTTATGATGAGATTCAAAATTTCAACGCCTCATATGTTGATGCTTGTCAGCAGTATAATAATAGGAAAGAGTTAGAATTGAGTCGTATTAGTGAGAGGAGACAGGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCAGTGGAGCAACCATTTTATTGGATTTCTGGTGAATGGCTTCGCCAATGGGCCGACAACATTATTCCAACTCCTCTTGACAACACGTCTATCCAATGCTCACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATGAAGCGATTGTCTGCTAAAGCGTGGGATACATTGTTCTCCAAGTATGGTGGGGGGCCAGCATTGTCTCATGATAACCACTGTTGGGATTGCCTGATTCATGGGGCTATGACAGTGGTGTCAGCTGACACCTATCGGGATAGAAGAGAATCAATGAAGTCACTTGCACGGGATATTCTAGATGGAAACTGCCTAGATGGAAAGTATTACATATCCAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACTAACAGCAGCCATTAGTTGTCCACATGGTCAACTGATGCCTGAGCAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGAGCTTTTGGCTCTTCTTATATGAAGATGCTGTTTCTGTAAAGCCTGATGATCCTTTGGGTGGCCCAACTTTTTCTTCAGATTCTGAAGAGTGTTCCCAATGCAGTAATGAATTATCTGAAGTAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAGGCAACGTCAGAATCATGAGAAATTATTCCAGGCTAAAAGTATGCCACTTTCTATGCATTGCAAGTATTTCTTGGTGCCTTCTTCATGGATTTCAAAATGGAGAAATTACATTAGTCCAACCCTGAAGAATTCAGATAAACCTGAAACTTTAGATGGGGTAATTGATTCACTGTTGTGTGAAAAGCACTCGCAGCTTGTTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGTTATAATCCAGAGGGAGTCTTCTGCAGGTGGCTTAACCATTGTATCCGAGAATGATTGGAAATGCTTCTGTGAAGAGTGGGGCGGTATTGAGACCAAAGGAATATCTGGAACAATTGATCATGTTAATGATTCAGAGAATGTTTTGACTGGATCCAGTGAAGAGATGCTAATATGTAAGGATCAGTTGGGCACGGCggataaaatgaattatgaaaatgggactggacaaattttaattaagacttGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAGAGAGAGCTGTGAGCTAATGCAGAAACTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGGAGGTACCTAGATCAATATTGGAGGCTTCAAAGGGATTTGTTGAAACAGATCGGCGAGTTTCCAAGCGCTCCCGCAAGACTAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCTTTATATCAACTGAAAATGATGATATGGGAATCTTTTGGGGTTGTCAAGGAAAACCAGATACTACATAAAGGTGATAGGATAATTGATACTGATAATGAATGTGCTACCCTCGCGGATGTGAACATATTTGCTGGAGATCAGATTATAGTAAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCCGTGGAACACTTCTGACAACGAACGTTTCATCCCAGTTGCAGGGGTATTGA 3303 0.4005 MLFSFLRARLYLCYRMSRPTTRSKNKRQRQGDDGTGTGEIWRKIHNTSVVTEHDVNQLYMIWKPVCSGCRVNSKDNPNCFCALVPPQNGARKSGLWQKMSDIVESLGHDPTKDLRASANSPAGLTNLGATCYANSILQCLYMNKSFREGMFSVEPDVLQQQPVLDQLARLFVQLHVSKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDEYLTIEELNGDNQYFCESCKTRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKITSAFSFPAELDMRHRMSELSQFNLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGCHPFGEGSSSSTTKSIKNDAIHSDSSEAMIADSNGNGLNATHSQSLHVETFLSSDAYMLMYHLKHTKNVGESGGVICGANHKEREGVSVAVQNGAPLPSHLYDEIQNFNASYVDACQQYNNRKELELSRISERRQEVRSVLAEAPVQPVEQPFYWISGEWLRQWADNIIPTPLDNTSIQCSHGKVPVSKVTSMKRLSAKAWDTLFSKYGGGPALSHDNHCWDCLIHGAMTVVSADTYRDRRESMKSLARDILDGNCLDGKYYISRPWLQQWWKRKVLDAPSEADAGLTAAISCPHGQLMPEQAPGAKRVLIPESFWLFLYEDAVSVKPDDPLGGPTFSSDSEECSQCSNELSEVACLEDSLRLVKQRQRQNHEKLFQAKSMPLSMHCKYFLVPSSWISKWRNYISPTLKNSDKPETLDGVIDSLLCEKHSQLVERPPELVFRRGVIIQRESSAGGLTIVSENDWKCFCEEWGGIETKGISGTIDHVNDSENVLTGSSEEMLICKDQLGTADKMNYENGTGQILIKTCPEVCESCIGERESCELMQKLNYCNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDTDNECATLADVNIFAGDQIIVRDSEIHENRDIADELCDDKMDLQHTEEGFRGTLLTTNVSSQLQGY 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3378 1100 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 17 1068 - -
Ssu1g3378 1100 SUPERFAMILY Ubiquitin-like 989 1058 IPR029071 -
Ssu1g3378 1100 Gene3D - 987 1058 - -
Ssu1g3378 1100 Gene3D - 760 880 IPR035927 -
Ssu1g3378 1100 Gene3D Cysteine proteinases 105 465 - -
Ssu1g3378 1100 ProSiteProfiles DUSP domain profile. 764 884 IPR006615 GO:0004843
Ssu1g3378 1100 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 359 377 IPR018200 GO:0004843|GO:0006511
Ssu1g3378 1100 Pfam Ubiquitin carboxyl-terminal hydrolase 123 462 IPR001394 GO:0004843|GO:0016579
Ssu1g3378 1100 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 1068 - -
Ssu1g3378 1100 CDD Peptidase_C19L 123 462 IPR033841 GO:0004843
Ssu1g3378 1100 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 122 465 IPR028889 -
Ssu1g3378 1100 Gene3D - 520 621 IPR035927 -
Ssu1g3378 1100 ProSiteProfiles Ubiquitin domain profile. 989 1055 IPR000626 GO:0005515
Ssu1g3378 1100 ProSiteProfiles DUSP domain profile. 636 743 IPR006615 GO:0004843
Ssu1g3378 1100 ProSiteProfiles DUSP domain profile. 529 621 IPR006615 GO:0004843
Ssu1g3378 1100 SUPERFAMILY Cysteine proteinases 120 466 IPR038765 -
Ssu1g3378 1100 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 123 138 IPR018200 GO:0004843|GO:0006511
Ssu1g3378 1100 CDD Ubl_USP48 988 1089 IPR044743 GO:0004197|GO:0004843|GO:0016579
Ssu1g3378 1100 SUPERFAMILY DUSP-like 531 621 IPR035927 -
Ssu1g3378 1100 SMART dusp 547 618 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3378 Ssu-Chr1 87202067 87212696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3378 120 400 Miscellaneous Gene Families AT4G31670 29.568 1.37e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3378 - K11858 gmx:100815770 2083.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0645 5 15089294 15098294 Ssu1g3378 1 87202067 87212696 PCT