Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0632 ATGCTGAGGAAGAGGACCGGGTCAATCCAGAAAGATCAACAACACACTGGTCAAATGGCAATCTCTGATACCAATTTTGAGTCCTATTCTCAGTCTCATGCTTTGGGGAGCAATGCCAAAAGCAACTCAATTTTCAATGCCCCTCTTCTGTTTGTGGGTATGGGTCCTAAGGGCTTGTTGGATTGTGATTCAGTTAAGAGCCCCACTTCCCCACTAGATGTTTCATTCCTTTCAAATCTAAGTAGCCCCTTTAGAACCCCAAGTTCATTGTCTAATGAGGGGCAACAAAGGAGCTGGGACTGCGCCAAAGTAGGTCTAAGTATTATAGATTCTTTGGAAGAATGTTCTAAGTTTTCTGGCAAAGTTCTCCAGGCCTCAGAGAGTAAGAAGACTAGTCTCTGTCCCCAAATGATTGCTAAAACTCCAAATTGTAAATCCTATGTGGATTCTGCTCAGGCATCTAAATCTTTACCTACAGATTTTTGTAAGCTTCCTTATACTCAAAATGGCTCTGTTTCCCACAAGGGTGAATCCACTGTTCTTTTTGAGATTGGAGAGACCCTACTAGAACATGAGCCCTTTGGGAAAACTGTGTCTTTTTCATTGGACTCTTGCAGTCCAATTAAAGATCTGTCTGGTTTAACTGGTTCCAACTCTGATTCTGACTCTCAGAATTTTGCTTTGAGTCAAGTGAGCTCTCCTCCTCATTTTATTGGAGGAAGCCATAATAACACAAAAACTTTGGTACCTGCTGAATTAAATTCAAACCCTGTAGCTCCAGCCTCTTCAAGTGAATTTATGAAGTCTCTATCAGCTAGTGAGATTGAACTCTCTGAGGATTACACCTGTGTAATTTCCCATGGTCCTAATCCCAAAACAACCCATATTTTCTGTGACTGCATTTTGGGAACTCGTGCTAatgattttaaaagtcattataaGAATGAAGAGGAGGGAAAGGGATTGTCCCTTTTCAGTGTTAGCAGCTTGCATGCTCCAAACCGATATCCTTCTGATGACTTCTTAAGTTTCTGCTACCGTTGCAACAAGAAATTGGAAGAGGGGAaagatatttacatatatagAGGTGAAAAAGCATTTTGCAGTTTGAGCTGCCGTGCAATAGAGATCATGATTGATGAGGAGGTGGAGAAATCCAATTCATCATCTGAAAACTCTCCAAAGTGGGAATTTGGAGGGGGACGTTTTGAAACAGGCATCCCCACAGCTACATAG 1236 0.4094 MLRKRTGSIQKDQQHTGQMAISDTNFESYSQSHALGSNAKSNSIFNAPLLFVGMGPKGLLDCDSVKSPTSPLDVSFLSNLSSPFRTPSSLSNEGQQRSWDCAKVGLSIIDSLEECSKFSGKVLQASESKKTSLCPQMIAKTPNCKSYVDSAQASKSLPTDFCKLPYTQNGSVSHKGESTVLFEIGETLLEHEPFGKTVSFSLDSCSPIKDLSGLTGSNSDSDSQNFALSQVSSPPHFIGGSHNNTKTLVPAELNSNPVAPASSSEFMKSLSASEIELSEDYTCVISHGPNPKTTHIFCDCILGTRANDFKSHYKNEEEGKGLSLFSVSSLHAPNRYPSDDFLSFCYRCNKKLEEGKDIYIYRGEKAFCSLSCRAIEIMIDEEVEKSNSSSENSPKWEFGGGRFETGIPTAT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0632 411 PANTHER FCS-LIKE ZINC FINGER 11 1 405 IPR044585 -
Ssu5g0632 411 Pfam zinc-finger of the FCS-type, C2-C2 335 382 IPR007650 -
Ssu5g0632 411 ProSiteProfiles Zinc finger FLZ-type profile. 340 384 IPR007650 -
Ssu5g0632 411 MobiDBLite consensus disorder prediction 386 411 - -
Ssu5g0632 411 PANTHER DUF581 FAMILY PROTEIN 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0632 Ssu-Chr5 14872991 14874323 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0632 - - gmx:100789230 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0632 5 14872991 14874323 Ssu1g3390 1 87440902 87442267 PCT