Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3390 ATGCTGAGGAAGAGGAACAGGTCAGTGCAGAAGGATCAACACCACATGAGTAATCTGACACTGTCTGAAGCCAATTCGGAGCACTATTCTCAATCTCATCATGCTTTGGGGCGCAACAACATCAAGGGCCACTCAATTTTCAATGTCCCTTGTCTGTTTGTGGGTCTAGGTCCAAAAGGATTGTTGGATTCTGATTCAGTTAGGAGCCCCACTTCTCCACTTGATGCTAGAGTTCTTTCAAATCTCGGCAACCCTGTTAGGAAGCCAAGATCATCACCCCATGAGGGGCACCAAAGGAGCTGGGATTGCTGCAAAGTAGGTCTAGGCATTGTGGAGTCTTTGGAAGACTGTTCTAGGTTTTCTGGGAAAATTCTCCAGTCACCAGAGAGCAAGAAAGTTAGTCTCAGTCCCCAAATGATGATCAAAGCCCCAAATTGCCAAATCCATAGGGATTCTCTAGAGGCATCTAAGTCTTTGCCCAAAGATTTTTGTAAGGCTCCTTTTGCCCCAAATAGATCTGTTATCCACAAGGGTGAATCTGAGTCCACTGTTCTTTTTGAGATTGGGGAAAGTGGCCCTGAGCATGAGCTGTTTGGGAGAACCAGGTCCTGTTCATTGGACTCATGCAGTCCACTGAAAGCTCTCTCTGGTTTAACCTCTTCCTTCTCTGATTCAGACACTGATAATTTTGCTATGAAAGATGTGAACATCCAAGTGAGCTCTCCTCCTCATTTTATTGGAGGAAGCCAGAACTCAAATACCTTCCCACCTACAAAGCTAAATTCAAACACTCTTTCCATATGCTCTTCCAATGAATTCATTAAGTCTCTATCAGCTACTGAGATTGAACTCTCTGAGGACTACACATGTGTGATCTCCCATGGCCCCAATCCCAAAACAACTCACATTTTTGGGGATTGCATTTTGGAGACTCATTCTAATGCATTTAAAAACCATGTTAAGAATgaagagaaggagaagggaGTGAACCATGTGAGTACCAGGCTAGGGAGTCCAAACCCATATCCCTCAAGTGACTTCTTAAGTTTCTGCCACCATTGCAACAAGAAGCTTGAAGAGGggaaagatatttatatttatggGGGTGAAAAGGCATTTTGCAGTTTAACTTGCCGTGCCATGGAGATCATGATTGATGAGGAACTAGAGAAATCAAACACCAACCCTCCTTGTGAAAACACTCCAAAGCCAAAACTTGGTGAGCTACTTTTTGAAACAGGCATCCTCTCAGCTACATAA 1260 0.427 MLRKRNRSVQKDQHHMSNLTLSEANSEHYSQSHHALGRNNIKGHSIFNVPCLFVGLGPKGLLDSDSVRSPTSPLDARVLSNLGNPVRKPRSSPHEGHQRSWDCCKVGLGIVESLEDCSRFSGKILQSPESKKVSLSPQMMIKAPNCQIHRDSLEASKSLPKDFCKAPFAPNRSVIHKGESESTVLFEIGESGPEHELFGRTRSCSLDSCSPLKALSGLTSSFSDSDTDNFAMKDVNIQVSSPPHFIGGSQNSNTFPPTKLNSNTLSICSSNEFIKSLSATEIELSEDYTCVISHGPNPKTTHIFGDCILETHSNAFKNHVKNEEKEKGVNHVSTRLGSPNPYPSSDFLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDEELEKSNTNPPCENTPKPKLGELLFETGILSAT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3390 419 MobiDBLite consensus disorder prediction 66 98 - -
Ssu1g3390 419 PANTHER DUF581 FAMILY PROTEIN 1 413 - -
Ssu1g3390 419 ProSiteProfiles Zinc finger FLZ-type profile. 346 390 IPR007650 -
Ssu1g3390 419 PANTHER FCS-LIKE ZINC FINGER 11 1 413 IPR044585 -
Ssu1g3390 419 Pfam zinc-finger of the FCS-type, C2-C2 341 388 IPR007650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3390 Ssu-Chr1 87440902 87442267 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3390 - - gmx:100779553 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0632 5 14872991 14874323 Ssu1g3390 1 87440902 87442267 PCT