Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0615 ATGCTCAAGCAAATCCTCAGCAAGCTTCCTCGGAAGTCGTCGAAACCCGACTCGGACGAGTTGACTCGGGGCGACTCGGTGCGTTCCGCCGATTGGCCACGCGCCGCTGCCAGAAGCCACAGGCCGCATGGTGGCGGAACATCCGCGGCCAAGCGGGCTTCGTCGTCGGCGGTGTTTCCGGCCAGCATGGTGTCCGGAATTGAACCTTTGGTGCCGTTTAAGGATGTTCCTAATGCTGAGAAGATGAACCTGTTTGTGAGCAAATTGAGCCTTTGTTGTGTGACATTTGATTTCACTGACCCTGGTAAGAGCATTTTAGATAAAGATGTGAAAAGGAAGACTTTGGTTGAGCTTGTTGATTTTGTGGCTTGTGGGCCAATGAGGTTTAGTGAGCCTGCTATCCTTGCTATGTGTAGAATGTGTGCCATTAATTTGTTTAGAGTTTTCCCTCCTAATTATAGGGcaagtggtggtggtgagaatgatgatgatgagcCTATGTTTGATCCTGCTTGGCCACATTTGCAACTTGTGTATGAATTGTTGCTCAAGTTTATCTCTTCTTCGTGCCTCGATGCTAAGGTGGCTAAAAAGTATATCGATCATTCGTTTATTGCCAGATTGCTTGAATTGTTTGATTCGGAGGATCCTAGGGAAAGAGATTGCTTGAAGACGATTCTGCATAGGATTTATGGGAAGTTCATGGTGCATAGACCCTATGTTCGGAAatctattaacaatatattttatcgGTTCGTGTTTGAGACTGAGAAGCACAATGGGATTGGTGAGTTGTTGGAGATTTTTGGGAGTGTGATTACTGGGTTTGCTTTGCCCTTGAAAGAGGAACACAAAATCTTCTTGTGGAGAGTGTTGATCCCCTTGCACAAGCCAAAATCTATCGGGGTCTACTTTCAGCAATTGTCCTACTGTGTTATGCAGTTTATAGAGAAGGAGCCGAAGTTAGCGAGCATTGTGATAAGGGGTTTGTTGAAATATTGGCCAGCAACAAATAGTCAGAAAGAGGTGATGTTTCTGGGTGAACTTGAAGAAATTTTGGAAGTAATTAACATGGTAGAGTTCCAGAGGATCATGGTCCCATTGTTTTGGCGGATTGGGTGCTGCATTAACAGCTTACACTTTCAGGTATCTGAAAGGGCCCTTTTCTTGTGGAACAATGACCACATTGTCAACTTGATTGCGCATAACCGACAAGTGATCCTGCCCATCATATTTCCAGCTTTAGATAGGAATGTTCAAAGCCATTGGAATCCGGCAGTCGTCAACTTAACCCACAATATTAGAAAGATGTTCTTGGAGATGGATGAGAAGCTCTTCATTTCTTGTCATAATCACTTTAAGGAGGAAGAAGCAATCTTGATCTCAGCAGCTGAGAAGCGAAAGGAGGCATGGAAACAACTTGAGCATGCAGCCAGTCTAAGGCCCGTGATCGGAAATACTGCAGTTTTAGTGTCCTGA 1479 0.4348 MLKQILSKLPRKSSKPDSDELTRGDSVRSADWPRAAARSHRPHGGGTSAAKRASSSAVFPASMVSGIEPLVPFKDVPNAEKMNLFVSKLSLCCVTFDFTDPGKSILDKDVKRKTLVELVDFVACGPMRFSEPAILAMCRMCAINLFRVFPPNYRASGGGENDDDEPMFDPAWPHLQLVYELLLKFISSSCLDAKVAKKYIDHSFIARLLELFDSEDPRERDCLKTILHRIYGKFMVHRPYVRKSINNIFYRFVFETEKHNGIGELLEIFGSVITGFALPLKEEHKIFLWRVLIPLHKPKSIGVYFQQLSYCVMQFIEKEPKLASIVIRGLLKYWPATNSQKEVMFLGELEEILEVINMVEFQRIMVPLFWRIGCCINSLHFQVSERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNVQSHWNPAVVNLTHNIRKMFLEMDEKLFISCHNHFKEEEAILISAAEKRKEAWKQLEHAASLRPVIGNTAVLVS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0615 492 PIRSF PP2A_B56 5 489 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu5g0615 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 492 - -
Ssu5g0615 492 MobiDBLite consensus disorder prediction 1 52 - -
Ssu5g0615 492 MobiDBLite consensus disorder prediction 10 27 - -
Ssu5g0615 492 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 72 478 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu5g0615 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 492 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu5g0615 492 SUPERFAMILY ARM repeat 83 474 IPR016024 -
Ssu5g0615 492 Gene3D - 77 477 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0615 Ssu-Chr5 14158045 14160780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0615 K11584 - gmx:100781390 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0615 5 14158045 14160780 Ssu1g3406 1 87677982 87680333 PCT