Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3406 ATGCTGAAACAATTCCTCAGTAAACTCCCTCGCAAGACACCGAAACCCGACCCGGACGAGTCATGCCGAGCTGGCTCGTCGCGCTCGGACGATTCCCCGCGCGCCGCCGGCAGAACCAACCGCCAGCACGGCGGCGGAAGCTCTGCCGCAGCGAAACGGACATCCGCGTCGGCGGTTTTTCCGGCAAGCACCGTGTCGGTGATCGAACCTTTGGTGCCGTTCAAGGATGTTCCGAGTTCCGAGAAGATGAATTTGTTCGTGAGCAAGTTGAGCCTGTGTTGCGTCACCTTCGATTTCACGGACCCCGGCAAGAACACGGTGGAGAAAGAGGTGAAGCGAAGAACCTTGGTTGAGCTCGTTGATTTTGTGTCCTCTTGTGGGTCCTCGAGGTTCGGTGAACCCGCTATTCTTGCTGTGTGCAGAATGTGTGCTATTAACCTCTTCAGAGTTTTCCCGCCAAATTATAGGTCCAATCGCGGTGGCgagaatgatgatgatgagcCAGCGTTTGATCCCGCTTGGCCTCATTTGCAGCTTGTGTATGAGTTGCTGCTTAAGTTTATAACCTCGAATTGTCTTGATGCTAAGGTGGCCAAGAAGTACATTGACCATTCGTTTATTTTAAGGTTGTTGGAGTTGTTTGACTCGGAGGATCCTAGGGAGAGGGACTGCTTGAAGACGATTCTGCATAGGGTTTATGGGAAGTTCATGGTGCATAGGCCCTACATAAGGAAGTCTATTAACAACTTGTTTTATAGGTTTGTGTTTGAGACCGAGAGGCACAATGGGGTTGCGGAGTTGTTGGAGATTTTTGGGAGCGTAATTAGTGGGTTTGCTTTGCCTTTGAAGGAGGAGCACAAGATCTTCTTGTGGAGGGTTTTGATCCCCTTGCACAAGCCAAAGTCTATGGGGGTGTACTTTCAGCAGTTGTCTTACTGCGTTACGCAGTTTGTTGAGAAGGAGCCCAAGCTGGCGAGCATTGTCATAAGGGGGTTGTTGAAGTATTGGCCGATAACGAATTGTCAGAAAGAGGTGATGTTCCTGGGTGAACTGGAGGAAATTTTGGAAGCAATTAACATGGTGGAGTTCCAGAGGGTCATGGTACCGTTGTTTTGGCGGATTGGATGCTGCATTAACAGTTTGCACTTTCAGGTAGCTGAAAGAGCCCTTTTCTTATGGAACAATGATCATATTGTCAACTTGATTGCTTACAACCGTCAGGTGATCCTGCCCATCGTATTTCCAGCCTTAGAGAAGAATTCTCAGGGCCACTGGAGCCAGGCCGTGCAGAACCTAACTCATAATGTCAGAAAAATGTTTGTGGAGATGGATGAGAAGCTGTTCCTGGCTTGTCACTCCCAGTTTAAGGAAGAAGAAGCAATGCTAAGTGCGGCGGCTGAGAAGCGGAAGGAAGCCTGGAAACAGCTAGAGCATGCAGCCAGTCTCCAGCCTGTGATTGGAAATACCCCAGTTTTAGTGTCTCCAATTTGA 1491 0.4889 MLKQFLSKLPRKTPKPDPDESCRAGSSRSDDSPRAAGRTNRQHGGGSSAAAKRTSASAVFPASTVSVIEPLVPFKDVPSSEKMNLFVSKLSLCCVTFDFTDPGKNTVEKEVKRRTLVELVDFVSSCGSSRFGEPAILAVCRMCAINLFRVFPPNYRSNRGGENDDDEPAFDPAWPHLQLVYELLLKFITSNCLDAKVAKKYIDHSFILRLLELFDSEDPRERDCLKTILHRVYGKFMVHRPYIRKSINNLFYRFVFETERHNGVAELLEIFGSVISGFALPLKEEHKIFLWRVLIPLHKPKSMGVYFQQLSYCVTQFVEKEPKLASIVIRGLLKYWPITNCQKEVMFLGELEEILEAINMVEFQRVMVPLFWRIGCCINSLHFQVAERALFLWNNDHIVNLIAYNRQVILPIVFPALEKNSQGHWSQAVQNLTHNVRKMFVEMDEKLFLACHSQFKEEEAMLSAAAEKRKEAWKQLEHAASLQPVIGNTPVLVSPI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3406 496 SUPERFAMILY ARM repeat 84 476 IPR016024 -
Ssu1g3406 496 MobiDBLite consensus disorder prediction 1 52 - -
Ssu1g3406 496 MobiDBLite consensus disorder prediction 10 27 - -
Ssu1g3406 496 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 73 480 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu1g3406 496 PIRSF PP2A_B56 4 492 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu1g3406 496 Gene3D - 78 479 IPR011989 -
Ssu1g3406 496 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 494 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu1g3406 496 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3406 Ssu-Chr1 87677982 87680333 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3406 K11584 - gmx:100775273 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0615 5 14158045 14160780 Ssu1g3406 1 87677982 87680333 PCT