Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0610 ATGGCCACTACTCTCTCTGAAGCCTATGGAGATCACCCTCTCCACCTACATCATATTATCCCCTTAGACTTTTCTTCAATTAGAACCTTACCTGATTCCCATGCATGGCCTCAATCTGAAGATGATGATAATCATGGAGCTGGATCATGCATACCCATCATTGACCTCATGGATCCTAATGCTATGGAACTCATAGGCCTTGCTTGTGAGAAGTGGGGTGCCTTCCAATTGAAGAACCATGGCATACCCTTGAGTGTTATTGAAGAGGTTGAAGCCGAGGCAAAGAGGCTCTTTGCTCTCCCCGCCGAAAGGAAATTGAAAGCCCTGAGATCCGCCGCCGGCGCCACCGGATACGGCCGAGCTCGGATATCACCGTTCTTCCCCAAGCACATGTGGCATGAAGGATTCACCATCATGGGGTCTCCATGTGATGATGCCAAAAAGATCTGGCCTAATGACTATGCACGGTTTTGCAACATAATGGATAATTACCAAAAGCAAATGAAGGTGCTAGCAGAGAAGCTAACACACAGGATATTCAACTTATTGGGGATTTCAGAGGAACAGAAGAGGTGGGTTGGTTCAACCAACCACTGTGAAGCTGTTCAGCTGAACTTCTACCCTAGTTGTCCTGAACCTAACCGAGCCATGGGCCTAGCCCCTCACACGGACACTTCCCTCCTCACAATTCTCCACCAAAGCCAAGCCAATGgcctccaaatcttcaaggaAGGAACAGGATGGGTCCCAGTGCACCCTCACCCTAACAACCTTGTTGTTCACACTGGTGACTTTCTTCATATCTTGTCCAACTCAAGGTTCCGCTGTGCGCTACATCGTGTCACGGTGAACAGTGCAAGGCATAGATACTCAGTGGCTTATTTCTATGGCCCCCCTATGGATTGTGTAGTTTCACCTTTGGTTCTTAGTTCCTTGCCTCGTTTTCGTTCTTTGACTGTGAAGGAGTATATTGGCATTAAGGCCAAGAACCTTGGAGGAGCGTTGTCTTTGATTAGTAtgcttaaaaactaa 1032 0.4641 MATTLSEAYGDHPLHLHHIIPLDFSSIRTLPDSHAWPQSEDDDNHGAGSCIPIIDLMDPNAMELIGLACEKWGAFQLKNHGIPLSVIEEVEAEAKRLFALPAERKLKALRSAAGATGYGRARISPFFPKHMWHEGFTIMGSPCDDAKKIWPNDYARFCNIMDNYQKQMKVLAEKLTHRIFNLLGISEEQKRWVGSTNHCEAVQLNFYPSCPEPNRAMGLAPHTDTSLLTILHQSQANGLQIFKEGTGWVPVHPHPNNLVVHTGDFLHILSNSRFRCALHRVTVNSARHRYSVAYFYGPPMDCVVSPLVLSSLPRFRSLTVKEYIGIKAKNLGGALSLISMLKN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0610 343 Pfam non-haem dioxygenase in morphine synthesis N-terminal 51 151 IPR026992 -
Ssu5g0610 343 SUPERFAMILY Clavaminate synthase-like 17 331 - -
Ssu5g0610 343 PRINTS Isopenicillin N synthase signature 222 243 - -
Ssu5g0610 343 PRINTS Isopenicillin N synthase signature 65 82 - -
Ssu5g0610 343 PRINTS Isopenicillin N synthase signature 258 284 - -
Ssu5g0610 343 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 195 298 IPR005123 -
Ssu5g0610 343 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 334 - -
Ssu5g0610 343 Pfam 2OG-Fe(II) oxygenase superfamily 201 298 IPR044861 -
Ssu5g0610 343 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 12 334 - -
Ssu5g0610 343 Gene3D - 17 330 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0610 Ssu-Chr5 14043886 14046260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0610 51 334 Glycosyltransferase AT5G59530 30.097 6.29e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0610 K04124 - gmx:100808546 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3411 1 87780796 87782475 Ssu5g0610 5 14043886 14046260 PCT