Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3411 ATGGACATGACTCTCTCTGAAGCCTACAGAGCACACCCTCTCCACCTCCGTCACATTATTCCCTTAGACTTTTCTTCAGTCTTGAACTTACCTGATTCCCACGCATGGTCTCTACCCAGTGATGATTATTTCTCATTCAATGATGCTGGATCATCCATACCCATCATAGACCTCATGGATCCCAATGCCACGGAACTCGTAGGCCTTGCATGTGAGAAGTGGGGTGCCTTCCAATTGAAGAATCATGGCATACCCTTTGGTTTTTTTGAAGAGGTTGAGCGAGAGGCCAAGCGCCTCTTCTCTCTCCCCGCTGAACAGAAGTTGAAGGCTCTTAGATCTCCCGGCGGTGCCACTGGATATGGCAGGGCTCGGATATCACCGTTCTTCCCCAAGTTCATGTGGCACGAAGGATTTACCATCATCGGTTCTCCATCCCATGATGCCAAAAAGATATGGCCTAATGATTATGCACGGTTTTGTGATTtgatggagaattatgagaagCAAATGAAGGTTCTAGCGGAGCGACTAGCACAGATGATGTTCGAGTTGTTGGGCATATGCGAGGAAAAAAGGAAGTGGGTTGGTGCAAGCAACGTATGTGGAGCTGTTCAGTTGAATTTCTACCCAAGTTGTCCCGAACCGAACCGAGCCATGGGCCTAGCCCCTCACACCGACACCTCTCTCTTCACAATCCTCCACCAAAGCCCAACCACCGGTCTGCAAATCTTCAAGGAAGGAAAAGGGTGGGTTCCTGTGCACCCACACCCTAACGCCCTAGTCGTTAACACAGGCGATCTCTTGCATATCATATCCAACGCGAGGTTCCGCTGTGCGCTTCACCGCGTTACTGTGAATAGCACCCGGAAACGTTACTCCGCGGCTTATTTCTATTCTCCACCAATAGATTACGTGGTTTCTCCTTTCGTCACTAGGGATCTCAATAACTCTGTTGCTCGTTTCCGCTCTGTGACTGTGAAGGAGTATATTGGGATTAAGGCCAAGAATTTCGGGGAAGCACTGTCTTTGATTAGTAATTga 1041 0.4793 MDMTLSEAYRAHPLHLRHIIPLDFSSVLNLPDSHAWSLPSDDYFSFNDAGSSIPIIDLMDPNATELVGLACEKWGAFQLKNHGIPFGFFEEVEREAKRLFSLPAEQKLKALRSPGGATGYGRARISPFFPKFMWHEGFTIIGSPSHDAKKIWPNDYARFCDLMENYEKQMKVLAERLAQMMFELLGICEEKRKWVGASNVCGAVQLNFYPSCPEPNRAMGLAPHTDTSLFTILHQSPTTGLQIFKEGKGWVPVHPHPNALVVNTGDLLHIISNARFRCALHRVTVNSTRKRYSAAYFYSPPIDYVVSPFVTRDLNNSVARFRSVTVKEYIGIKAKNFGEALSLISN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3411 346 SUPERFAMILY Clavaminate synthase-like 19 338 - -
Ssu1g3411 346 Pfam 2OG-Fe(II) oxygenase superfamily 204 300 IPR044861 -
Ssu1g3411 346 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 300 IPR005123 -
Ssu1g3411 346 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 153 IPR026992 -
Ssu1g3411 346 Gene3D - 25 337 IPR027443 -
Ssu1g3411 346 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 12 340 - -
Ssu1g3411 346 Coils Coil 163 183 - -
Ssu1g3411 346 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3411 Ssu-Chr1 87780796 87782475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3411 53 329 Glycosyltransferase AT5G59530 30.612 1.26e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3411 K04124 - gmx:100818754 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3411 1 87780796 87782475 Ssu5g0610 5 14043886 14046260 PCT