Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0609 ATGGGTAGCGAGAGTGAGATGATCCCATGTCTGGAATTTTCCAGGGATGACTTTGGATTAGAGGAAGGGAGTGAGGAATGgaaaaaaatgagcaagaaaGTGAGAGAAGCATGTGAGAGCCATGGTTGCTTCCTCTTAATTTATGATAAGGTCCCTAAGGGTCTACGTGATGATATGTTTCTATGCATAAAAGACTTGTTTGATTTACCTGAAGAAACCAAGAGGAAGCACACAAGCCCAAAGCCTTATAGGAGCTACAATTGTGACTGCCCCGTTATTCCACTGTGTCAAAGCTTTGGGATTGATGATGCTCCCCTCTCGGATACTGCTCAGGCCTTCACTAATCTCATGTGGCCTCAAGGAAACCCCGCTTTCCGtgagaCGTTGAAGTCCACGAGCACCAAGATGCTTGAAATGAGTTTCATCATTCTGAAGATGATTCTAGAGGGTTATGGCCTTCCAAAGCAATACACTTCGGATATTGAAGAGATGAAGAGCTCTAGTAACTTTCGGTTGATGAAGTACAGAGTTCCTGAAAGTGATCCAGTTTGTGAAACTGCTATGTTGCCTCACACCGACAAAAGCGCCATAACCATTTTATGCGAAAATGAAGTCCAGGGTCTTGAGGTGCTaaccaaaacaaacaaatgGATTCAATTGAAGATACCCCAGGAAGGCTTTGTGGTCCTCGTTGGTGACGTATTGAAGGCATGGAGCAATGGAAGACTTCAAGCGGCTACACACAGAGTGATGATGAGTGGAGATAAAGAGAGGTACTCATTTGCACTATTTGCGGTGCCAAAGGAAGAGGTGAAGATTGAGGTGCCCCCTGAGTTGGTGGAAGACAAGATGCATCCTCTGCGTTACAGGCCGTTCAATTATGGGGATTACTTCCAGTACTTTGTTTCAACTCTCAAGGAAAATGCATTAGATGTGTTTGCAGGCGTTTGA 951 0.4322 MGSESEMIPCLEFSRDDFGLEEGSEEWKKMSKKVREACESHGCFLLIYDKVPKGLRDDMFLCIKDLFDLPEETKRKHTSPKPYRSYNCDCPVIPLCQSFGIDDAPLSDTAQAFTNLMWPQGNPAFRETLKSTSTKMLEMSFIILKMILEGYGLPKQYTSDIEEMKSSSNFRLMKYRVPESDPVCETAMLPHTDKSAITILCENEVQGLEVLTKTNKWIQLKIPQEGFVVLVGDVLKAWSNGRLQAATHRVMMSGDKERYSFALFAVPKEEVKIEVPPELVEDKMHPLRYRPFNYGDYFQYFVSTLKENALDVFAGV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0609 316 Pfam 2OG-Fe(II) oxygenase superfamily 178 265 IPR044861 -
Ssu5g0609 316 Pfam non-haem dioxygenase in morphine synthesis N-terminal 8 87 IPR026992 -
Ssu5g0609 316 SUPERFAMILY Clavaminate synthase-like 7 304 - -
Ssu5g0609 316 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE AOP1-RELATED 4 315 - -
Ssu5g0609 316 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 315 - -
Ssu5g0609 316 Gene3D - 6 313 IPR027443 -
Ssu5g0609 316 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 165 267 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0609 Ssu-Chr5 13970969 13974410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0609 126 301 Glycosyltransferase AT5G59530 23.464 1.74e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0609 - - gmx:100817159 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0609 5 13970969 13974410 Ssu1g3414 1 87807899 87808258 PCT