Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3414 ATGGAAAGTGCGAAAGATGAGACTATGATGATCCcatgttttgatttttgcagGGGTGGGGTGGCATTAGAAGAAGGGAGTGAGGAATGGAAAGAAATGAgcaagaaaatgagagaagcaTGTGAGAGTCATGGTTGCTTCCTCTTGATGTGTGACGAGATCATCCCCAAGTGTGTGCGTGAAGAGATGTTTAATGGTATGAAAGCATTGTTTGATCTGCCTGAAGAAACAAAGCAGCAACACATCAGTCCAAAGCCTTTTAGGAGCTACAATGGCAAGAGCCCCGTCGTCCCCCTTTTAGAAAGCTTTGGGATTAATGATCGATGCTCCTCACTCGGCTTCGGCTCTGGCCTTCACTAA 360 0.4167 MESAKDETMMIPCFDFCRGGVALEEGSEEWKEMSKKMREACESHGCFLLMCDEIIPKCVREEMFNGMKALFDLPEETKQQHISPKPFRSYNGKSPVVPLLESFGINDRCSSLGFGSGLH 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3414 119 Pfam non-haem dioxygenase in morphine synthesis N-terminal 11 92 IPR026992 -
Ssu1g3414 119 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 109 - -
Ssu1g3414 119 Gene3D - 1 108 IPR027443 -
Ssu1g3414 119 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE AOP1-RELATED 5 109 - -
Ssu1g3414 119 SUPERFAMILY Clavaminate synthase-like 7 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3414 Ssu-Chr1 87807899 87808258 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3414 - - gmx:100790408 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0609 5 13970969 13974410 Ssu1g3414 1 87807899 87808258 PCT