Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0607 ATGGGTTCTTGCAAAGACCAAGAAAAAGAGGTTGTTCACGTTCAAGGGCCTATCATAGTAGGTGCTGGCCCTTCGGGCCTAGCCGTGGCTGCGTGTCTCTCAGAACACGAAGTCCCTTTTGTGATTCTTGAGAGGAGCAACTGCATAGCTTCCCTTTGGCAAAACAAAACCTACGACCGCCTCAAACTCCACCTCCCGAAACGGTTCTGCGAGCTTCCCTTGAAGGGCTTCCCCCACACTTTCCCAAAGTACCCCACAAAGTACGAGTTTATTTCCTACATGGAGTCCTATGCCTCTCACTTCAACATTCAACCCAAGTTCAACCAAACCGTTGAGAGTGCGGAGTTTGACAAAGGGTCGAAACTTTGGGTGGTTAGGACTCAGGAGTTTGAGTATGTTTCTCACTGGCTTGTGGTGGCCACTGGGGAGAATGCTGAACCTGCGGTCCCTAGAATTAATGGGATGGAGCTTTTTCATGGTCCCATTGCTCACACTAGTGAGTACAAGTCTGGCTCTGAGTACAAAAACCAAAGGGTTTTGGTCATTGGGTGTGGCAATTCTGGAATGGAAGTTAGCTTGGACCTTTGTAGACACAATGCCAACCCTCACATGGTTGCAAGAAATACAGTACATGTGCTTCCTAGGGAGATGTTTGGCTTCTCAACATTTGGGATAGCTATGGCGCTCTATAAGTGGCTTCCGATACAGTTAGTAGACAAGATCCTCTTGCTTGCGACCAACTTTCTTTTGGGGAACACCAATCACTACGGCATCAAGAGGCCCAAAACCGGCCCAATCGAGCTCAAACTCGCCACTGGGAAAACCCCAGTCCTCGACGTGGGTCAACTTGCACAAATAAAATGTGGTAACATAAAGGTGATGGAGGGTGTGAAGGAGATAACAAGAAATGGTGCCAAATTTATGGATGGACAAGAAAAGGAATTCGATGCTATAATCTTGGCAACAGGATACAAGAGCAACGTGCCTACTTGGCTCAAGGGATGTGATTTTTTCACCAAAGATGGAATGCCCAAAACGCCCTTTCCTCATGGGTGGAAAGGAGACCAGGGATTGTATACGGTGGGGTTTACAAGAAGGGGTATTCAAGGAACGTCGTGTGATGCCATCAAGATCGCTGAAGACATAGCTGAACAGTGGAGAACCGTAGAGGACAAGAGTCACTGCGTTTCACATATCATCCTACTCAATGATTAA 1215 0.4741 MGSCKDQEKEVVHVQGPIIVGAGPSGLAVAACLSEHEVPFVILERSNCIASLWQNKTYDRLKLHLPKRFCELPLKGFPHTFPKYPTKYEFISYMESYASHFNIQPKFNQTVESAEFDKGSKLWVVRTQEFEYVSHWLVVATGENAEPAVPRINGMELFHGPIAHTSEYKSGSEYKNQRVLVIGCGNSGMEVSLDLCRHNANPHMVARNTVHVLPREMFGFSTFGIAMALYKWLPIQLVDKILLLATNFLLGNTNHYGIKRPKTGPIELKLATGKTPVLDVGQLAQIKCGNIKVMEGVKEITRNGAKFMDGQEKEFDAIILATGYKSNVPTWLKGCDFFTKDGMPKTPFPHGWKGDQGLYTVGFTRRGIQGTSCDAIKIAEDIAEQWRTVEDKSHCVSHIILLND 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0607 404 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 8 395 - -
Ssu5g0607 404 PRINTS Pyridine nucleotide disulphide reductase class-II signature 135 143 - -
Ssu5g0607 404 PRINTS Pyridine nucleotide disulphide reductase class-II signature 16 38 - -
Ssu5g0607 404 PRINTS Pyridine nucleotide disulphide reductase class-II signature 174 198 - -
Ssu5g0607 404 PRINTS FAD-dependent pyridine nucleotide reductase signature 178 196 - -
Ssu5g0607 404 PRINTS FAD-dependent pyridine nucleotide reductase signature 17 36 - -
Ssu5g0607 404 Gene3D - 7 388 IPR036188 -
Ssu5g0607 404 SUPERFAMILY FAD/NAD(P)-binding domain 177 387 IPR036188 -
Ssu5g0607 404 SUPERFAMILY FAD/NAD(P)-binding domain 18 210 IPR036188 -
Ssu5g0607 404 Pfam Pyridine nucleotide-disulphide oxidoreductase 18 209 - -
Ssu5g0607 404 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Ssu5g0607 404 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA1-RELATED 8 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0607 Ssu-Chr5 13790346 13792855 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0607 K11816 - gmx:100798781 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0607 5 13790346 13792855 Ssu1g3418 1 87923801 87926544 PCT