Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3418 ATGGAGTCTTACAACGGACAAGAAGGAGAGCAACAAGTAAAGTGCGTGTGGGTTCATGGACCCATCATCGTAGGAGCAGGACCGTCGGGGTTAGCCGTGGCCGCATGTCTCTCTCAGCACGGAGTGCCTTACGTGATTCTCGAGAGGAGTGACTGCATAACCTCCCTCTGGCAACACAGAACCTACGACCGTCTCAAACTCCACCTCCCCAAACACTTCTGCGAGCTCCCCTTAATGCCCTTCCCTGACGATTTCCCAAAATACCCTTCCAAGAACCAGTTCATCTCCTACGTCGACTCCTACGCCTCACGCTTCTCCATCCGCCCCAGGTTCAACCAATCCGTCCAGAGCGCCGAGTTCGACCCCACTTCCGAATTTTGGGTGGTAAGAACCCGCGACTTTCAGTACATTTCCCCGTGGCTTGTGGTTGCTACTGGAGAGAATGCTGAGCCTGTGATCCCTTCAATTGCTGGCATGGACAAGTTTCACGGACCCATTCTTCACACCAGCGTGTACAAATCTGGTTCTCAGTACAAAAACCAGAGAGTGTTGGTCATTGGTTGCGGCAACTCAGGAATGGAAGTCAGCTTGGATCTTTGCAGGCACAACGCCTTCCCTCACATGGTTGCAAGAAACACAGTACATGTTCTGCCTAGGGAGATGTTTGGCTTCTCAACGTTCGGAATAGCTATGGCTCTCTTGAAATGGCTTCCAATAAAGTTGGTAGACAAGTTGATCTTGGGGGTAGCTAGGTTCATGTTGGGTGACACCGCTCGCTATGGTGTTAGGAGGCCCAAAACGGGGCCCATAGAGCTCAAACTTGTCACCGGGAAAACTCCTGTGCTTGATGTTGGACAAGTGGCACAAATAAGATCCGGTAACATAAAGGTGATGGAAGGTGTGAAGGAGATAACAAGACATGGTGCCAAGTTTATGGATGGACAAGAAAAGGAGTTCAGCACTATAATATTGGCAACAGGATACAAAAGCAACGTTCCCACTTGGCTTAAgAGCTGTGAATTTTTCACCAAAGAGGGAATGCCCAAAACGCCGTTTCCAATGGGTTGGAAGGGAGAGAATGGATTGTATACAGTGGGTTTCACAAGAAGAGGTCTTCTTGGAACTGCCTCAGATGCCGTAAAGATTGCTAAAGACATCGCTGATCAATGGATGACCTTTAAGGACAAATCATACCGTAATTCCCACATCATCTTGCTCAAGAGTACATAG 1230 0.4894 MESYNGQEGEQQVKCVWVHGPIIVGAGPSGLAVAACLSQHGVPYVILERSDCITSLWQHRTYDRLKLHLPKHFCELPLMPFPDDFPKYPSKNQFISYVDSYASRFSIRPRFNQSVQSAEFDPTSEFWVVRTRDFQYISPWLVVATGENAEPVIPSIAGMDKFHGPILHTSVYKSGSQYKNQRVLVIGCGNSGMEVSLDLCRHNAFPHMVARNTVHVLPREMFGFSTFGIAMALLKWLPIKLVDKLILGVARFMLGDTARYGVRRPKTGPIELKLVTGKTPVLDVGQVAQIRSGNIKVMEGVKEITRHGAKFMDGQEKEFSTIILATGYKSNVPTWLKSCEFFTKEGMPKTPFPMGWKGENGLYTVGFTRRGLLGTASDAVKIAKDIADQWMTFKDKSYRNSHIILLKST 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3418 409 PRINTS Pyridine nucleotide disulphide reductase class-II signature 20 42 - -
Ssu1g3418 409 PRINTS Pyridine nucleotide disulphide reductase class-II signature 178 202 - -
Ssu1g3418 409 PRINTS Pyridine nucleotide disulphide reductase class-II signature 139 147 - -
Ssu1g3418 409 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 12 396 - -
Ssu1g3418 409 Pfam Pyridine nucleotide-disulphide oxidoreductase 22 213 - -
Ssu1g3418 409 PRINTS FAD-dependent pyridine nucleotide reductase signature 21 40 - -
Ssu1g3418 409 PRINTS FAD-dependent pyridine nucleotide reductase signature 182 200 - -
Ssu1g3418 409 SUPERFAMILY FAD/NAD(P)-binding domain 178 386 IPR036188 -
Ssu1g3418 409 Gene3D - 20 392 IPR036188 -
Ssu1g3418 409 SUPERFAMILY FAD/NAD(P)-binding domain 22 287 IPR036188 -
Ssu1g3418 409 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA1-RELATED 12 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3418 Ssu-Chr1 87923801 87926544 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3418 K11816 - gmx:100789347 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0607 5 13790346 13792855 Ssu1g3418 1 87923801 87926544 PCT