Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0585 ATGGGTGGGAGAGGGATCAAGCTCTTCGACGAAGAAAGAAACGGTCTTTTCTCAATTTCCAATTTTGGGTCTCAATGGGGTGGTGCCGTTCACGACCCGGGTGTTTTGTTTGCGAGCATCGGCCAAGTGGGAGTGGGGTTCGGCGTTCAAGAACCGGACCCTTCTTCTGGTTCCCAACACAACGGCGGCGTGAGCGTGAGGATCCCCTGCACCGAGTTGTACGTGAGGTACGTGCAATCGGAGGGGAGGGTGAGGATTCTGGGGGTTCCCGAGGAAGAAGAGGGAGTGGGGGAAGGGGTTGAGGGGAAGAAAAGGGGTGTCTTTAAGGGGTTGAGGATCAAGGTGAAGAACCCATCGCTCAGGAGGTTGATCAGTGGTGCCTTTGCTGGGGCAGTGTCACGCACCACTGTGGCGCCATTGGAGACCGTAAGGACTCATTTGATGGTTGGGAGTAGTGGGAATTCCACCGGGGAGGTGTTCGGGAATATCATGAAGACCGACGGGTGGAAGGGGCTGTTTAGGGgtaattttgtcaatgtgattcGGGTTGCACCTAGCAAGGCCATTGAGCTATTTGCTTATGATACTGTTAACAAGAACCTCTCAGCAAAGCCAGGGGAACAACCTAAACTCCCCATTCCTCCATCGTTGATTGCAGGTGCTTGTGCTGGAGTTAGTTCAACTATATGCACATATCCTCTGGAGTTACTAAAGACTCGACTAACTATCCAGAGGGGTGTTTATGATGGTCTACTAGATGCATTCCTGAAAATAGTTAGAGATGAGGGTGCTGCAGAACTTTACAGAGGCCTTACTCCCAGTCTGATTGGAGTAATTCCATATTCTGCCACCAATTACTTTGCCTATGACACTCTGAGGAAAGCATACagaaaagtttttaagaaaGAGAAGATTGGCAACATTGAAACCCTTTTGATGGGATCAGCAGCTGGTGCTATTTCAAGTAGTGCTACCTTTCCACTGGAAGTGGCCCGCAAGCATATGCAAGTGGGGGCCCTCAGTGGAAGACAAGTTTACAAAAATGTGATTCATGCCCTTGCAAGCATTCTTGAGCAAGAAGGGATCCAAGGATTGTATAAAGGGTTGGGACCTAGCTGCATGAAGTTGGTGCCAGCTGCAGGAATCTCTTTCATGTGCTATGAAGCATGTAAGAGGATATTGGTAGAGAACGATGAGGAGGAGTAG 1206 0.4859 MGGRGIKLFDEERNGLFSISNFGSQWGGAVHDPGVLFASIGQVGVGFGVQEPDPSSGSQHNGGVSVRIPCTELYVRYVQSEGRVRILGVPEEEEGVGEGVEGKKRGVFKGLRIKVKNPSLRRLISGAFAGAVSRTTVAPLETVRTHLMVGSSGNSTGEVFGNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSAKPGEQPKLPIPPSLIAGACAGVSSTICTYPLELLKTRLTIQRGVYDGLLDAFLKIVRDEGAAELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKVFKKEKIGNIETLLMGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVIHALASILEQEGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVENDEEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0585 401 Pfam Mitochondrial carrier protein 211 298 IPR018108 -
Ssu5g0585 401 Pfam Mitochondrial carrier protein 118 202 IPR018108 -
Ssu5g0585 401 Pfam Mitochondrial carrier protein 305 397 IPR018108 -
Ssu5g0585 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 305 393 IPR018108 -
Ssu5g0585 401 PANTHER ADENINE NUCLEOTIDE TRANSPORTER BT1, CHLOROPLASTIC/MITOCHONDRIAL 30 400 - -
Ssu5g0585 401 SUPERFAMILY Mitochondrial carrier 118 389 IPR023395 -
Ssu5g0585 401 PRINTS Mitochondrial carrier protein signature 268 286 IPR002067 GO:0055085
Ssu5g0585 401 PRINTS Mitochondrial carrier protein signature 122 135 IPR002067 GO:0055085
Ssu5g0585 401 PRINTS Mitochondrial carrier protein signature 175 195 IPR002067 GO:0055085
Ssu5g0585 401 PRINTS Mitochondrial carrier protein signature 314 336 IPR002067 GO:0055085
Ssu5g0585 401 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Ssu5g0585 401 PRINTS Mitochondrial carrier protein signature 135 149 IPR002067 GO:0055085
Ssu5g0585 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 200 IPR018108 -
Ssu5g0585 401 Gene3D Mitochondrial carrier domain 113 399 IPR023395 -
Ssu5g0585 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 295 IPR018108 -
Ssu5g0585 401 PANTHER SOLUTE CARRIER FAMILY 25 30 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0585 Ssu-Chr5 12981888 12985505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0585 1 400 Organic Solute Cotransporters AT4G32400 63.524 3.42e-176 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0585 K14684 - gmx:100816041 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0585 5 12981888 12985505 Ssu5g0585 5 12981888 12985505 ECH
Ssu5g0585 5 12981888 12985505 Ssu1g3446 1 88523598 88527749 PCT