Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3446 ATGGGTAGGAGGGGAGTCCAACTATTCAATGAGAAAAGAGACGGATTTTTCTCTGTTACCAATTTGGGGTTCGAATCTGATGATGGGTGCTATCAATTTGGAGGTTTGTTTGCCAGCGTTGGTCAAATGGGAATGGGGTTTGGCGTGCAACCCAACGACCCTTCTGATTCGCGCGACAATGGTGGCATGAAGCTTCCCTTCAACGAGTTGTTCCTAAAGTATGTTCCATCGCAGGGGAAAGATGAGGTTTTTGAGGAAAGGGTTAAGGGGAAGAAGAGAAAGGGTGGTGTTTCACTCAAGCTTAAGATCAGGAACCCTTCGCTGAGGAGGTTGTTTAGTGGGGCAGTTGCTGGGGCCGTGTCTCGCACTGCTGTGGCGCCTTTGGAGACTATAAGGACTCACTTGATGGTGGGGACTAGTGGCCATTCCACCACTGAGGTGTTCCACAATATTATGAAAACTGATGGCTGGAAGGGATTGTTTAGGGGTAATCTTGTCAATGTCATCCGGGTTGCCCCTAGCAAGGCCATTGAGCTATTTGCTTACGATACAGTGAACAAGAACCTATCCCCAAAGCCTGGGGAGCAGCCCAAACTCCCAATTTCTGCATCATTGATTGCAGGTGCCTGTGCTGGAGTGAGTTCAACTATATGCACATATCCTCTTGAATTAGTCAAGACTCGACTAACTATCCAGAGAGGTGTTTATGATGGTCTGCTTGATgcattcttgaaaataattcgAGAAGAGGGTCCTGCGGAACTTTACAGGGGCCTCGCACCTAGTCTTGTCGGAGTTATCCCATACGCTGCTACCAATTACTTCACCTACGACACTTTAAAGAAAGCATACCGCAAAACTTTTAAACAAGAGAAGGTCGGCAACATCGAAACCCTTTTGATTGGTTCAGCAGCTGGTGCTATTTCAAGTAGTGCAACTTTTCCACTTGAGGTGGCTCGCAAGCACATGCAAGTTGGAGCTCTCAGTGGAAGGCAGGTTTACAAGAATGTGGTTCATGCCCTTGCTAGCATACTAGAACAAGAAGGGATCCAAGGTTTATATAGAGGGCTGGGACCTAGTTGCATGAAGTTGGTACCAGCTGCTGGAATCTCTTTCATGTGCTACGAAGCATGCAAGAGGATATTGATAGATAATGAGGAAGAGGATTAG 1170 0.4632 MGRRGVQLFNEKRDGFFSVTNLGFESDDGCYQFGGLFASVGQMGMGFGVQPNDPSDSRDNGGMKLPFNELFLKYVPSQGKDEVFEERVKGKKRKGGVSLKLKIRNPSLRRLFSGAVAGAVSRTAVAPLETIRTHLMVGTSGHSTTEVFHNIMKTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPISASLIAGACAGVSSTICTYPLELVKTRLTIQRGVYDGLLDAFLKIIREEGPAELYRGLAPSLVGVIPYAATNYFTYDTLKKAYRKTFKQEKVGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVVHALASILEQEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKRILIDNEEED 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3446 389 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 25 388 - -
Ssu1g3446 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 293 381 IPR018108 -
Ssu1g3446 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 188 IPR018108 -
Ssu1g3446 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 199 283 IPR018108 -
Ssu1g3446 389 PRINTS Mitochondrial carrier protein signature 123 137 IPR002067 GO:0055085
Ssu1g3446 389 PRINTS Mitochondrial carrier protein signature 163 183 IPR002067 GO:0055085
Ssu1g3446 389 PRINTS Mitochondrial carrier protein signature 256 274 IPR002067 GO:0055085
Ssu1g3446 389 PRINTS Mitochondrial carrier protein signature 302 324 IPR002067 GO:0055085
Ssu1g3446 389 PRINTS Mitochondrial carrier protein signature 214 232 IPR002067 GO:0055085
Ssu1g3446 389 PRINTS Mitochondrial carrier protein signature 110 123 IPR002067 GO:0055085
Ssu1g3446 389 Gene3D Mitochondrial carrier domain 103 387 IPR023395 -
Ssu1g3446 389 PANTHER SOLUTE CARRIER FAMILY 25 25 388 - -
Ssu1g3446 389 Pfam Mitochondrial carrier protein 199 286 IPR018108 -
Ssu1g3446 389 Pfam Mitochondrial carrier protein 293 385 IPR018108 -
Ssu1g3446 389 Pfam Mitochondrial carrier protein 107 189 IPR018108 -
Ssu1g3446 389 SUPERFAMILY Mitochondrial carrier 106 377 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3446 Ssu-Chr1 88523598 88527749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3446 1 388 Organic Solute Cotransporters AT4G32400 67.857 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3446 K14684 - gmx:100810035 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3446 1 88523598 88527749 Ssu1g3446 1 88523598 88527749 ECH
Ssu5g0585 5 12981888 12985505 Ssu1g3446 1 88523598 88527749 PCT