Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0575 ATGTCCAAAGTTCTCGGCTTTTCCGGAGGTGATGACTTTTGCCCTGGGGGTTCAATATACGCCAACCCCAAGGAAGCAAGTTTCTTCCTGCCTCTTGGTCCTCAAGTTGATATATACTTTCCTCCTCGCAAGAGATCGCGTGTCAATGCTCCATTTGTTTTCGATGGAGAATGGTTTGAGCAGAAGCAGAAAACCTCTATTGAAGCCTTGCCAGATGAATGTCTCTTTGAGATCTTTAGAAGGTTGCCTGCTGGCGAAGACAGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTCATGCTTCTAAGCAGTATTTGTAAAAATGAAATCTGCAGCGTAGAGCACGAGAGTGAAAAGGATGGTGATGATCTAGAATTTGGAGGTGAGGGATACCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACAGATGTTAGACTTGCTGCCATAGCTGTTGGGACTGCGTCTCGAGGAGGATTGGGGAAGCTTTCAATCCGTGGAAGCAACATGGTTCGTGGGGTGACTAGTCTTGGCCTCAAAGCAGTTGCTCGTGGATGCCCTTCTTTAAAGGCTCTTTCTCTATGGAATGTTGCTACTGTTGCTGACGAGGGCCTAATTGAGATTGCTAATGGATGTCACCAGCTTGAGAAGCTTGACCTTTGCAAGTGCCCCTCAATTTCGGACAAGGCTTTAATTGCAGTTGCAAAGAACTGCCAGAATCTGACTGAGCTATCATTAGAATCTTGTCCTAACATTGGTAATGAAGGTCTACGAGCTATTGGGAAATTCTGCTCCAATCTAAGGTCCATATCTATCAAGGACTGCACTGGTGTTAATGATCAGGGAATTGCTGGATTGTTTTCTTCAACTTCTTTGGTTCTGACAAAGGTGAAGCTCCAGGCACTGACTGTTTCAGATCTCTCTCTAGCTGTTATTGGACATTATGGCAAGTCAGTCACCGATCTTGTCCTTAATTGCCTCCCAAATGTCAGTGAGAGGGGGTTCTGGGTCATGGGTAATGGTAATGGATTGCAGAAGCTAAAATCACTTACAGTTGCATCCTGCAGAGGAGTAACAGATATCGGGCTTGAAGCTGTAGGGAAGGGTTGTCCAAATCTGAAGATTGCACATCTTCATAAGTGTGCTTTTCTGTCGGACAACGGGTTGATATCATTCGCCAAGGCTGCTTCATCACTCGAGAGCCTGCGATTGGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTCAGTGTTCTTTTTAACTGTGGTGCAAAATTGAAGGCTATCTCTTTGGCGAGTTGCTACGGGATCAAAGATCTGAGTTTGGTGTTGCCTGCAGTATCTCCATGTGAATCACTTCGGTCATTATCTATCTGCAACTGCCCTGGATTTGGCAATGCCTCCTTGTCTGTATTGGGAAAGCTGTGCCCTCAGCTTCAGCATGTTGAATTGAGTGGACTTGAGGGAGTGACAGATGCGGGGCTTCTTCCCCTGATTGAGAGTTCCGAGGCTGGTTTGGTTAAAGTGAATCTTAGTGGTTGCATGAATGTTACCGACAAAGTAGTTTCATCCTTGGCCAATCTGCATGGTTGGACTCTTCAGAATCTAAACCTTGATGGTTGTAAAAAAATCAGTGATGCTAGCTTGATGGCAGTTGCAGAAAATTGCACACTGCTATGTGACCTTGATGTCTCCAAGTGCACAATCACCGATGCTGGGATAGCAGCCCTGGCATGCGCCGAACAGATTAATCTGCAAATTCTTTCTTTGTCAGGTTGCACCTTGGTCTCAGACAGGAGCTTGCCCACGTTGAGAAAATTGGGCCACACCCTTTTGGGACTGAACATCCAGCACTGCAATGCAATCAACAGCAGCACTGTAGACACGCTTGTGGAGCTTCTCTGGAGGTGTGACATCCTCTCCTGA 1923 0.4639 MSKVLGFSGGDDFCPGGSIYANPKEASFFLPLGPQVDIYFPPRKRSRVNAPFVFDGEWFEQKQKTSIEALPDECLFEIFRRLPAGEDRSACACVSKRWLMLLSSICKNEICSVEHESEKDGDDLEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNMVRGVTSLGLKAVARGCPSLKALSLWNVATVADEGLIEIANGCHQLEKLDLCKCPSISDKALIAVAKNCQNLTELSLESCPNIGNEGLRAIGKFCSNLRSISIKDCTGVNDQGIAGLFSSTSLVLTKVKLQALTVSDLSLAVIGHYGKSVTDLVLNCLPNVSERGFWVMGNGNGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLISFAKAASSLESLRLEECHRITQFGFFSVLFNCGAKLKAISLASCYGIKDLSLVLPAVSPCESLRSLSICNCPGFGNASLSVLGKLCPQLQHVELSGLEGVTDAGLLPLIESSEAGLVKVNLSGCMNVTDKVVSSLANLHGWTLQNLNLDGCKKISDASLMAVAENCTLLCDLDVSKCTITDAGIAALACAEQINLQILSLSGCTLVSDRSLPTLRKLGHTLLGLNIQHCNAINSSTVDTLVELLWRCDILS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0575 640 SUPERFAMILY RNI-like 162 329 - -
Ssu5g0575 640 Pfam F-box domain 70 106 IPR001810 GO:0005515
Ssu5g0575 640 SMART LRR_CC_2 395 420 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 475 500 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 211 236 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 263 288 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 237 262 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 581 606 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 422 447 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 555 579 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 185 210 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 502 527 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 449 474 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 529 554 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 343 368 IPR006553 -
Ssu5g0575 640 SMART LRR_CC_2 369 394 IPR006553 -
Ssu5g0575 640 Gene3D Ribonuclease Inhibitor 60 290 IPR032675 -
Ssu5g0575 640 Gene3D Ribonuclease Inhibitor 291 442 IPR032675 -
Ssu5g0575 640 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Ssu5g0575 640 Pfam Leucine Rich repeat 557 577 IPR001611 GO:0005515
Ssu5g0575 640 Pfam Leucine Rich repeat 236 259 IPR001611 GO:0005515
Ssu5g0575 640 Gene3D Ribonuclease Inhibitor 563 638 IPR032675 -
Ssu5g0575 640 Gene3D Ribonuclease Inhibitor 443 501 IPR032675 -
Ssu5g0575 640 Gene3D Ribonuclease Inhibitor 502 562 IPR032675 -
Ssu5g0575 640 SMART fbox_2 70 111 IPR001810 GO:0005515
Ssu5g0575 640 PANTHER UNCHARACTERIZED 17 631 - -
Ssu5g0575 640 SUPERFAMILY RNI-like 308 636 - -
Ssu5g0575 640 PANTHER EIN3-BINDING F-BOX PROTEIN 1 17 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0575 Ssu-Chr5 12692245 12694910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0575 K14515 - gmx:100819226 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0575 5 12692245 12694910 Ssu5g0575 5 12692245 12694910 ECH
Ssu5g0575 5 12692245 12694910 Ssu1g3457 1 88766688 88769234 PCT