Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3457 ATGTCTCAAGTTTTCAGCTTTACCGGAAGTGATGATTTTTGCCCTGGGGGTCCTATATATCCTAACCTCAAGGAACCAAATCTCTTCTTGTCGCTTGGCCGTCAGGTTGATGTTTACTTTCCTCTTCAGAAGAGGTCTCACTTTGGTGTTCCATTTGATATCAGTGGAGAATGGTTTGAGCAGAAGCAGAAGCCGAAGCAGAAGACATCCATTGAATCTTTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGCAGGACAAGATAGGAGTGTCTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGTAAGAATGAAATCTGCAGCAATGGAAATATCGGAAATGAAAACAAAGGTGATGATCAGGAATTTAGTGACGAAGGATACCTATCCCGAAGCTTGGAGGGAAGGAAGGCCACAGATGTTAGACTTGCTGCCATTGCTGTTGGGACGGCATCTCGAGGAGGTTTGGGGAAGCTTTCAATTCGTGGATGTAATTCTGATCGTGGGGTGACTAATGTAGGTCTCAAGGCAATTGCTCATGGATGCTCTTCTCTGAAGGTTTTCTCTCTATGGGATGTTGCTACTGTCGATGATGAAGGCCTCATTGAGATTGCTAGTGGGTGCCATCAGTTAGAGAAACTTGACCTTTGCAAGTGCCCCAAAATTTCCAACAAGGCTATAATTGCAGTCGCGAAGAACTGTCCAAATCTGACCGAGTTATCAATAGAGTCATGTCCTAACATTGGTAATGAAGGTCTAAAAGCTATTGGGAAGTGGTGTCCCAATCTCAGGTCTATCTCAATCAAGGGTTGCTCTGGAGTTGGTGATCAGGGAATTGCTGGCCTCTTGTCTTCAGCTTCTTTTGTTCTAACAAAGGTGAAGCTTGAGTCGCTGATTGTTTCTGATCTCTCTCTAGCAGTGATTGGGCATTACGGCTTTGCAGTTACCAATCTTGTCCTAAGTTGCCTCCCAAATGTCAGTGAGAAAGGGTTCTGGGTTATGGGTAATGGCCGTGGACTGCAGAAACTaacttcaatcaaaattgaatgCTGCCAAGGAGCAACAGATATTGGGCTTGAAGCTATTGGAAAAGGTTGTCCAAATGTGCAAAACTTCCAGCTTCGTAAGTGTGCATTTCTGTCAGACAAGGGGTTGGTGTCATTTACCAAGGCTGCTCCATCAATTGAGAGCCTACAATTGGAAGAGTGCCACAGAATTACCCAAATTGGGCTTTTTGGTGTCTTTTTTAACTGTGGTGCAAAGCTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTGAATATGGAATTGCCAGCAATATCTCCTTCTGAATCAATTTGGTCAATAACAATCCGTGACTGCCCTGGATTTGGCAATGCTACCCTTGCTTTACTTGGAAAGCTGTGTCCTCGGCTTCAGCAGGTTGAATTGAGTGGGCTTCAGGGAGTAACAGACGCAGGGTTTCTTCCACTGCTGGAGAGGTCTGAGGCTGGTCTGGTTAAAGTTAATCTAAGTGGTTGCGTGAATGTGACAGACAGAGTAGTTTTGTCCATGGTCAAGTCACATGGATGGACTCTCGAAGTGCTAAACCTTGATGGTTGTAAAACAGTCAGCGATGCTAGCTTGATGGCAGTTGCAGGCAATTGCCCATTGCTCTCTGATCTTGATGTTTCCAGGTGTGCAATCACTGATACCGGTATTGCAGCCCTTGCACATGGTAAGCAGTTCAACCTGGAGATACTTTCTTTGGCAGGTTGCGCATTGGTTTCAGACAAGAGCATACCCTCATTGAAGAAGCTGGGCCATTCCCTTGCAGGATTAAACATCAAGCGTTGCAATGCGATCAGCAGCCGCTCTGTCGACAAGCTTCTGGAACATCTCTGGATGTGTGACATTCTCTACTGA 1938 0.4499 MSQVFSFTGSDDFCPGGPIYPNLKEPNLFLSLGRQVDVYFPLQKRSHFGVPFDISGEWFEQKQKPKQKTSIESLPDECLFEILRRLPAGQDRSVCASVSKRWLMLLSSICKNEICSNGNIGNENKGDDQEFSDEGYLSRSLEGRKATDVRLAAIAVGTASRGGLGKLSIRGCNSDRGVTNVGLKAIAHGCSSLKVFSLWDVATVDDEGLIEIASGCHQLEKLDLCKCPKISNKAIIAVAKNCPNLTELSIESCPNIGNEGLKAIGKWCPNLRSISIKGCSGVGDQGIAGLLSSASFVLTKVKLESLIVSDLSLAVIGHYGFAVTNLVLSCLPNVSEKGFWVMGNGRGLQKLTSIKIECCQGATDIGLEAIGKGCPNVQNFQLRKCAFLSDKGLVSFTKAAPSIESLQLEECHRITQIGLFGVFFNCGAKLKVLTLISCYGIKDLNMELPAISPSESIWSITIRDCPGFGNATLALLGKLCPRLQQVELSGLQGVTDAGFLPLLERSEAGLVKVNLSGCVNVTDRVVLSMVKSHGWTLEVLNLDGCKTVSDASLMAVAGNCPLLSDLDVSRCAITDTGIAALAHGKQFNLEILSLAGCALVSDKSIPSLKKLGHSLAGLNIKRCNAISSRSVDKLLEHLWMCDILY 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3457 645 Gene3D Ribonuclease Inhibitor 137 240 IPR032675 -
Ssu1g3457 645 Gene3D - 64 113 - -
Ssu1g3457 645 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 636 - -
Ssu1g3457 645 SMART fbox_2 74 115 IPR001810 GO:0005515
Ssu1g3457 645 Gene3D Ribonuclease Inhibitor 458 645 IPR032675 -
Ssu1g3457 645 Pfam Leucine Rich repeat 560 582 IPR001611 GO:0005515
Ssu1g3457 645 Pfam Leucine Rich repeat 241 264 IPR001611 GO:0005515
Ssu1g3457 645 Pfam F-box domain 72 110 IPR001810 GO:0005515
Ssu1g3457 645 PANTHER UNCHARACTERIZED 16 636 - -
Ssu1g3457 645 SUPERFAMILY F-box domain 64 108 IPR036047 GO:0005515
Ssu1g3457 645 SUPERFAMILY RNI-like 165 641 - -
Ssu1g3457 645 Gene3D Ribonuclease Inhibitor 254 457 IPR032675 -
Ssu1g3457 645 SMART LRR_CC_2 507 532 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 161 189 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 374 399 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 400 425 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 534 559 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 560 584 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 586 611 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 190 215 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 612 637 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 216 241 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 348 373 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 454 479 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 242 267 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 480 505 IPR006553 -
Ssu1g3457 645 SMART LRR_CC_2 268 293 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3457 Ssu-Chr1 88766688 88769234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3457 K14515 - gmx:100805418 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3457 1 88766688 88769234 Ssu1g3457 1 88766688 88769234 ECH
Ssu5g0575 5 12692245 12694910 Ssu1g3457 1 88766688 88769234 PCT