Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0573 ATGGATCCAATTAACCTTTTACCTGCTGATGGAGTTGAAGTGGTCCACCAAAATGGTGTTCATGATGAACCTTCTAATTCTGGAGAGGATGGTGGCATTTCATATGATTTAGACCCCAGTGTTACTGAAACTGCAGAAACTGTAGCCCCAAATggaaattttgataatttccaTCAATCAGATAGTGCTGCAAATGATAACTCATTTGTTGCAGAAATCAAAGAATCAAATGACAACATTGATGGCAATAATATGACCATTCCTAAGGAAGAGGAAGTGAAAATATCAGATAAAACAAAGCAATCAAGAGCACCAAAAGGTCTTGTCAAGAATAAGAATGCAAAGGCTCCAAGTTGCATTGGTGTTCATGCAAGTTTGATGAATAAGAGCaaaattggaaaagataaaGAAGCATCTTCTACTGTTTCAAATGGTACTTCAGCTTCAGACTCTCGCCCAAGACAGCCTATTAAAAGCAGATCATTCAACGACAGGCAAACACAATTGTCCAAGCACCCTTCAAAGTCTGATGCAGCATCTTCTGAAGTATTGGTGGAGAAGACAAAACCAAAATCATTGAAAAATGGACCCCTTGATAAAGTTCAAGGAGAAGCAGAATCTTCCTTAAGTACCAACACAGAAGATGCCAAAGCTCGAAGGGTGGGGACACTTCCAAATTATGGATTCAGTTTTAGGTGTGGTGAACGAGCTGAGAGAAGAAAAGAGTTCTACAATAAGCTTGAGGAAAGGATTCAAGCAAAGGAAGTGGAGAAGAGTAACATGCAAGCAAAAACCAAGGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAGGAGCCTAACATTTAAAGCAACTCCAATGCCAAATTTTTACCAGGAGCCTCCTCCTCCTAAGGTGGAGCTAAAGAagATACCAACTACTAGAGCAAAATCACCCAAGCTCGGTCGTAAGAAGGGTTCAGTAAATTCAGAGTCAGATGGAAACACTAGCAGCAGTTCCCGACAAGCTCGTTTAAGTCTGGATGAGAAAGTGTCAGAGAGTAACCCCACTAAGGGACCTACCCCTCCTGTCCACCAAAAGAAGCCGCAACGAAAATCTCTTCCTCCTCGGCTTGCTTCTGAAAGGAACAGTTTATCAAATTCCACAAATGCACCAACATCATCCAAGGCTATCAAAGATGAAAAGTCTTCCATATCTAGTGCTGCTAAAACAGATACCAACTCATCCAATGCTacagaagagaaaacaaagccAATTGCAGCAAATGAAGAGAAAGGTACCTTCTCCAGTGAGACAAGTGATGCTGTGCCTCTGAATGTGGTTCTTTCAGATAAGCCAAGTGGAGAAGAGTCTCTTGTGAATGGTGATATAGAAGTTGAAGAGAATCCTCAACTCTCTTTGGCACAAGAACCAATCACAGCGGGGCATTGA 1431 0.4025 MDPINLLPADGVEVVHQNGVHDEPSNSGEDGGISYDLDPSVTETAETVAPNGNFDNFHQSDSAANDNSFVAEIKESNDNIDGNNMTIPKEEEVKISDKTKQSRAPKGLVKNKNAKAPSCIGVHASLMNKSKIGKDKEASSTVSNGTSASDSRPRQPIKSRSFNDRQTQLSKHPSKSDAASSEVLVEKTKPKSLKNGPLDKVQGEAESSLSTNTEDAKARRVGTLPNYGFSFRCGERAERRKEFYNKLEERIQAKEVEKSNMQAKTKETQEAEIKMLRRSLTFKATPMPNFYQEPPPPKVELKKIPTTRAKSPKLGRKKGSVNSESDGNTSSSSRQARLSLDEKVSESNPTKGPTPPVHQKKPQRKSLPPRLASERNSLSNSTNAPTSSKAIKDEKSSISSAAKTDTNSSNATEEKTKPIAANEEKGTFSSETSDAVPLNVVLSDKPSGEESLVNGDIEVEENPQLSLAQEPITAGH 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0573 476 MobiDBLite consensus disorder prediction 321 354 - -
Ssu5g0573 476 PANTHER PROTEIN WVD2-LIKE 4 1 466 IPR044833 GO:0008017
Ssu5g0573 476 MobiDBLite consensus disorder prediction 282 476 - -
Ssu5g0573 476 MobiDBLite consensus disorder prediction 423 437 - -
Ssu5g0573 476 MobiDBLite consensus disorder prediction 85 104 - -
Ssu5g0573 476 Pfam Targeting protein for Xklp2 (TPX2) domain 229 299 IPR027329 -
Ssu5g0573 476 MobiDBLite consensus disorder prediction 370 416 - -
Ssu5g0573 476 PANTHER PROTEIN WVD2-LIKE 5-RELATED 1 466 - -
Ssu5g0573 476 Coils Coil 244 264 - -
Ssu5g0573 476 MobiDBLite consensus disorder prediction 137 177 - -
Ssu5g0573 476 MobiDBLite consensus disorder prediction 47 66 - -
Ssu5g0573 476 MobiDBLite consensus disorder prediction 17 38 - -
Ssu5g0573 476 MobiDBLite consensus disorder prediction 75 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0573 Ssu-Chr5 12666783 12670679 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0573 - - gmx:100786958 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0573 5 12666783 12670679 Ssu1g3459 1 88777457 88783600 PCT