Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3459 ATGATGGATCCTAGCAACCTTTTGCCAGCTGATGGACTTGAAGACGTCCACCAAAATGGTGTTCGTGAAGAACTGTCTAATGGAAAGGATGGTGTTGCTTCAAATGTAGACCCTGGTGTTACCAAAATTATAGAAACTGCAGCTCCAAatggaaattttgaaaatttcaaccaGACTGATAGCACTGCAACTGATTACTCATCCAAGGCAGAAATCAAAGAAGGATCAAATGACAATGTAGATGGTAACAATGTCACCATTTCTAAGGAAGAGGAAGTGGAAATCATAGATCAGATGGAGCAACTAAAAGCAACAAAGGGTCCTGTCAAGAATAAGAATGCAAAGCCACCAAGCCCTAGAGGCGTTCATGCAAGTTCAGTAAAAAAGAGCAAAGATGGGAAAGATGAAGAGGCAGCATCTGCTGTTTCAAATGGTACTTTTACTTTAGACGCTCACCCAAGACAGCCTATTAAAAACAGATCATTGAGTGATAAGCAGGCTTGGCTGTCCAAGCACCCTGGAAAGTCTAATGCAGCACCTTCTGAAGCATCAATGGAGAAGACTAGGCCACGATTATCGAAGAAAGGGGCTCTTGATAATCTTCAAGTAGAAGCAGAGTCTTCTTcTCCTACTGCAGAAGATGCCAAACCTCGCAGGGCGGGAACACTCCCAAATTATGGATTCAGTTTCAAGTGTGATGAGCGAgcagagagaagaaaagagTTCTACACTAAGCTTGAGGAAAAGATTCATGCAAAGGAAGTGGAGGAGAGTAACCTGCAAGCAAAAACCAAGGAGACCCAAGAAGCTGAGATTAAGAAGCTTAGAAAAAGTCTAGGATTTAAAGCAACTCCAATGCCAAGCTTCTACCAGGAGCCTCCTGCTCCTAGGGTGGAGttaaaaaagATGCCAACTACAAGAGCAAAATCTCCCAAGCTTGGTCGTAAGAAGAGTACAGAGCCAGAAGGAAACACTAGCAGCAGTGCTCGACAAGGTCGTTTAAGTCTGGATGAGAAAGTGTCTCAGACTAACCCCGCTAAAGGAATTAGTCCTCTTCATCAAAAGAAGCCACAACGGAAGTCTCTTCCTCCACGACTGGCTTCTGAAAAGATCAGTTCATCCAATTCAGCATTTGTGCAGACCACATCTAAGGGAGTGAATGATGACAAAACCTCCTTATCAAGTGTAACAACTGAAGTTATCACCTTATCCAATGTAACAGGGGAAGAGAAAGTTGAAATATCTGCAGCCACTGAAGAGAACAATGTCTTATTGGATGAGACTAGTAAAGTTCTGCCTAACTTAGAGCCAGGTGAAGCAGAATCTCCTGTGAATGGTGATTTAGTCATGGAAGAGAAACCACAGCTCACCTTGGCACAAGAGCCGATAGCGGCGGAGCACTAA 1404 0.4224 MMDPSNLLPADGLEDVHQNGVREELSNGKDGVASNVDPGVTKIIETAAPNGNFENFNQTDSTATDYSSKAEIKEGSNDNVDGNNVTISKEEEVEIIDQMEQLKATKGPVKNKNAKPPSPRGVHASSVKKSKDGKDEEAASAVSNGTFTLDAHPRQPIKNRSLSDKQAWLSKHPGKSNAAPSEASMEKTRPRLSKKGALDNLQVEAESSSPTAEDAKPRRAGTLPNYGFSFKCDERAERRKEFYTKLEEKIHAKEVEESNLQAKTKETQEAEIKKLRKSLGFKATPMPSFYQEPPAPRVELKKMPTTRAKSPKLGRKKSTEPEGNTSSSARQGRLSLDEKVSQTNPAKGISPLHQKKPQRKSLPPRLASEKISSSNSAFVQTTSKGVNDDKTSLSSVTTEVITLSNVTGEEKVEISAATEENNVLLDETSKVLPNLEPGEAESPVNGDLVMEEKPQLTLAQEPIAAEH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3459 467 PANTHER PROTEIN WVD2-LIKE 4 2 457 IPR044833 GO:0008017
Ssu1g3459 467 Coils Coil 243 273 - -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 50 70 - -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 247 278 - -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 1 36 - -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 320 349 - -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 50 84 - -
Ssu1g3459 467 Pfam Targeting protein for Xklp2 (TPX2) domain 228 298 IPR027329 -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 98 228 - -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 247 395 - -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 428 447 - -
Ssu1g3459 467 PANTHER PROTEIN WVD2-LIKE 5-RELATED 2 457 - -
Ssu1g3459 467 MobiDBLite consensus disorder prediction 367 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3459 Ssu-Chr1 88777457 88783600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3459 - - gsj:114408962 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3459 1 88777457 88783600 Ssu1g3459 1 88777457 88783600 ECH
Ssu5g0573 5 12666783 12670679 Ssu1g3459 1 88777457 88783600 PCT