Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0567 ATGGCACTTCATGTCTTATATGGAGAGGGAGATGTAGGAGAATATAAACCTGAAATGGAGGTGGTTGGAGAAGTTTCCATGAGCGTTACCGTGGCCGAGTTGATGATGGGGGAGGAGATGAAGACGGAGTCAAATTCTAGTCAGGTTCAAAGAACACTTCCAATCCAATTGAAGGTGCATGGTTTGTTCATGGAAGCTACACTTTCGGTTTCATTGAGGTTATTGAAACTGAGGGATTTTCATGATGACTTGCCAAGAACATTTGTAGACGAAGTGACAAGCCTTGGGGAGAAAAATAATGGGAAGGTTGATCAAGATGAGCAACCGAGTCCTTATGAATCGGACCAGTTGGCCGTGTTTGACTCGGATGACTCATCTGATGAGTCCACAACCACAAGCAGTGGCAGCAGCAATAGCAGCACTAGCACTGCAATTCACTGTGCAGGGTCAAGAGTTACAAATGGGTCTGAGAGGTTTATGGGCTCAGATACAGAGACCCTTTTGGACACTATGAAGAGGAATTGGTCCATGTTGTCATGGAATAGAAGCTTCAAGGGATGGAGTTTTAAAAGAACCACCTCAAGGAAACAAGACTCTTTGACCTCACATTGCATGGGACCATACTTTGATCACAATAATTGCAGTGCAAGTGGCTGGGAAACTAGGGAACTCTGGAGTAGAGATGGACAAGCAAAGCTCAAAACCAATGTGTTCTTTGCTTCCTTAGACCAAAGAAGCAAACAAGCTTGTGGTGAGAGTGCATGTACAGCACTAGTTGTGTTCATAGCCCATTGGCTTCATTCCAACAAGGGCATGCCAACAAGGGCCCAATTTGATAGCCTCATCAAAAGGGGTTCCTCTGAATGGAGAAGACTAATCCACAGTGATCACTACCTAAAGCTCTTCCCAGATAAGCATTTTGATCTAGAGACAGTCTTGGAAGCCAACATTAGGCCTCTGGTTGTTCTCCCTCAAAATTCCTACACAGGATTTTTCTCCCCTGAGAAGTTTCAGTGCTTGGAAGGAGCCATGTCCTTTGATGACATTTGGGATGAGATAACTAGAAATTATGTGGTTGATTATGAGCCAAGAATTTACATAGTGAGTTGGAATGACCATTTCTTTGTTCTGAAGGTGGAAGTTGATGCTTGCTATGTGATCGACACTTTGGGGGAGAGGCTTTTTGAGGGATGCCAACAAGCGTTCATATTGAAGTTTGATGGATCAAGTTTGATGCATGCAAAGGGGAGTAAGGAAGAAAAAGTTGAGATAGTTTACAATGGAAAAGAGTGTTGTAAAGAGTTCATCAAACGCTTTCTTGCTGCCATACCACTTGGGCAACTAGAAGAGGAGGAGCAAAATAAAGGGACTGTTTATAATCCTTACTTTCACAGGCAACTGCAGATTGACTTCCATTATAGTTTGTTATAA 1431 0.4312 MALHVLYGEGDVGEYKPEMEVVGEVSMSVTVAELMMGEEMKTESNSSQVQRTLPIQLKVHGLFMEATLSVSLRLLKLRDFHDDLPRTFVDEVTSLGEKNNGKVDQDEQPSPYESDQLAVFDSDDSSDESTTTSSGSSNSSTSTAIHCAGSRVTNGSERFMGSDTETLLDTMKRNWSMLSWNRSFKGWSFKRTTSRKQDSLTSHCMGPYFDHNNCSASGWETRELWSRDGQAKLKTNVFFASLDQRSKQACGESACTALVVFIAHWLHSNKGMPTRAQFDSLIKRGSSEWRRLIHSDHYLKLFPDKHFDLETVLEANIRPLVVLPQNSYTGFFSPEKFQCLEGAMSFDDIWDEITRNYVVDYEPRIYIVSWNDHFFVLKVEVDACYVIDTLGERLFEGCQQAFILKFDGSSLMHAKGSKEEKVEIVYNGKECCKEFIKRFLAAIPLGQLEEEEQNKGTVYNPYFHRQLQIDFHYSLL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0567 476 MobiDBLite consensus disorder prediction 123 145 - -
Ssu5g0567 476 PANTHER - 2 475 - -
Ssu5g0567 476 MobiDBLite consensus disorder prediction 120 145 - -
Ssu5g0567 476 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 2 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0567 Ssu-Chr5 12532770 12535358 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0567 - - gmx:100787458 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0567 5 12532770 12535358 Ssu5g0567 5 12532770 12535358 ECH
Ssu5g0567 5 12532770 12535358 Ssu1g3462 1 88848368 88851409 PCT