Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0564 ATGTCGCTGAAACCGTCGAATTCGTCGGAGAATCTGATGCTTCCGATGTCCGATCCTCCGAAGATACAAGACGGTTACGCCGCCGACGAGAAGCTCTTCAAAGGCTCCGCCATGACCAAACGCGGAGCCTTCGCCGCCATCTCTTACATGTCCTGCGCTGTTCTGTTGGTGATGTTCAATAAAGCAGCGCTTTCGTCTTATAACTTTCCATCCGCTAACGTCATCACCCTTCTTCAGATGGTATGTTCGTGttgctttctctttttattgAGACGCTGGAGGATGATTTCTTTCACAGCAGGCGAATCCTTACTTATATCAGATAACTcaacaaaatttgtatcattGAAGACTTTGAAGCACACTCTTCCTCTATCAGGagcatatttattttacatgCTAGTCACCATGGAGTCTGTTCGTGGAGTAAATGTTCCAATGTACACAACTCTTAGGAGGACCACAGTGGTATTTACAATGCTTGTAGAGTTTGTCCTAGTGGGGCAGAGGTACACACCTTCTGTCATTTTCAGTGTTGGCTTGATTGTCTTTGGTGCGTTTGTTGCTGGAGTGCGGGATTTTTCTTTTGATGCTTATGGCTATGCTGTTGTTTTCATGTCAAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTGGTTGTATTCCTATACTCTCACTCTCTCACATAAAGTGGAAATTTTATTCCTTCTTAGCCtgcattttcttatttatatggTATCATGTCTTTTTATCAGGGAAAACTAGTGGTCTTAATAGCTTTGGCCTTATGTGGTGCAATGGTATCGTATGTGGGCCATTTTTGCTCATCTGGACATTTGTTCGTGGTGAATTGAAGACAACAATCAATTTTCCATATCTCTTCTCACCTGGTTTTATTgttattttacttttttcctgCATACTGGCATTCTTCTTGAATTACTGCATTTTTCTGAACACAACTCTAAATTCAGCTGTGACACAGACAATTTGTGGTAATCTGAAGGATCTATTTACTATTGGCCTCGGCTGGATAATTTTTGGTGGGCTACCATTTGATTTTTGGAACGTAATTGGGCAGTTACTCGGTTTTGCTGGATCTGTTTTATACGCCTACTATAAGCTCTTTGGCAAATAA 1146 0.3935 MSLKPSNSSENLMLPMSDPPKIQDGYAADEKLFKGSAMTKRGAFAAISYMSCAVLLVMFNKAALSSYNFPSANVITLLQMVCSCCFLFLLRRWRMISFTAGESLLISDNSTKFVSLKTLKHTLPLSGAYLFYMLVTMESVRGVNVPMYTTLRRTTVVFTMLVEFVLVGQRYTPSVIFSVGLIVFGAFVAGVRDFSFDAYGYAVVFMSNIATAIYLATIARIGCIPILSLSHIKWKFYSFLACIFLFIWYHVFLSGKTSGLNSFGLMWCNGIVCGPFLLIWTFVRGELKTTINFPYLFSPGFIVILLFSCILAFFLNYCIFLNTTLNSAVTQTICGNLKDLFTIGLGWIIFGGLPFDFWNVIGQLLGFAGSVLYAYYKLFGK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0564 381 PANTHER BNAA08G30680D PROTEIN 16 249 - -
Ssu5g0564 381 PANTHER SOLUTE CARRIER FAMILY 35 241 381 - -
Ssu5g0564 381 PANTHER SOLUTE CARRIER FAMILY 35 16 249 - -
Ssu5g0564 381 PANTHER BNAA08G30680D PROTEIN 241 381 - -
Ssu5g0564 381 Pfam Triose-phosphate Transporter family 52 212 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0564 Ssu-Chr5 12468485 12476534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0564 10 220 Organic Solute Cotransporters AT2G13650 25.822 3.94e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0564 K15281 - gmx:100819763 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0564 5 12468485 12476534 Ssu5g0564 5 12468485 12476534 ECH
Ssu5g0564 5 12468485 12476534 Ssu1g3467 1 88914087 88917754 PCT