Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0556 ATGGAGATTCCACGTAAATATCGCTTCTCTCCAATTTTCTCGCTGATTCTACTTCCGTTCGTCATCGTCGTGGTGCTGCGTCGAGGTCAGTTACTCGAATTCGCGACAATCGCGGGTTCAAAACCTGGATATTCCGTTCCGCTAAATCGTCTGCGAACAAAGCTTTCCGGCGAGAATCAGCTCCTCGCCGTGGGAAATTCCGGCGAACTTCACCGGAACAAATTCGGCGACCGAACTTCTACTAGGAAAGTAGGAAAAGTCGAACAAAGACTCGCGGGAGCAAGAGCTGCAATGCGCAAGGCTGCGTCAGGATCAGAAGGTGAGAGAAGCAATCTCACTGTGGCAACCACCACGCATGACGGCGGCGACCGCCACTACGTCCCCGCCGGAGCTATCTATCGTAACGCCCGCTTATTTTACCGGAGCTACTTGGAGATGGAGAAAATATTCAAGGTATACGTATACCCAGACGGGGACCTACCAATTGTTCACGATGGACCGTGCAAGGACATATACTCAATTGAAGGGAGGTTCCTCCATGAGATGGAACATAGCGCTGGGAGGTTTAGGACCAACGATCCCAATGATGCTCACGTTTTCTTCTTGCCATTCAGTGTCACTTGGATGGTCAAGTACCTCTATACTCCACTCTCTTACAACGTCACTCCTTTAAAGCAGTTTGTCTCTGACTATGTGAGAGTGATATCTACAAGGCACCCCTTCTGGAATAGAACTCATGGTGCGGACCACTTCATGCTTGCCTGTCACGATTGGGGTCCTCATGCATCCCAGGGAAATTCCTTCCTCTACAATACCTCAATCCGTGTCTTGTGCAACGCCAACACTTCAGAGGGGTTTAAACCTCGAACGGACGTGTCCTTACCAGAAATCCACCTTTATGGAGGTGAAGTGTCCCCTAAACTGCTTTCACCCCCACCCGACAACACCCCACGTCACTATCTTGCCTTTTTCGCCGGCGGTTTGCATGGCCCAATCCGCCCCAACCTCCTCCACCACTGGAAAAACCATGACGATGAAATTCGCGTCTACGAGTACCTCCCCAAGGACCTAGACTACTATTCCCTCATGCAAAATTCCAAGTTCTGTCTTTGTCCAAGTGGGCACGAAGTGGCTAGCCCCAGAATCGTGGAGGCAATTTATGCCGAATGCGTTCCCGTGATCCTATCTAAGTATTATGTGTTGCCCTTCAGTGATGTCCTGCAATGGGAGGCGTTTTCAGTGCAGGTGGATGTTTCAGATATTCCAAGGTTGAAAGAGATTCTTAGTGCAATTTCAGACGACAAGTATCGGATGCTCAAGGAGGGAGTAAAGGCTGTGAGGAGACATTTTACACTGAATCGGCCTGCCAAGAGATTTGATGTATTTCATATGATCTTGCACTCTATATGGTTAAGGAGACTAAACATAGAACTCAGATAG 1440 0.491 MEIPRKYRFSPIFSLILLPFVIVVVLRRGQLLEFATIAGSKPGYSVPLNRLRTKLSGENQLLAVGNSGELHRNKFGDRTSTRKVGKVEQRLAGARAAMRKAASGSEGERSNLTVATTTHDGGDRHYVPAGAIYRNARLFYRSYLEMEKIFKVYVYPDGDLPIVHDGPCKDIYSIEGRFLHEMEHSAGRFRTNDPNDAHVFFLPFSVTWMVKYLYTPLSYNVTPLKQFVSDYVRVISTRHPFWNRTHGADHFMLACHDWGPHASQGNSFLYNTSIRVLCNANTSEGFKPRTDVSLPEIHLYGGEVSPKLLSPPPDNTPRHYLAFFAGGLHGPIRPNLLHHWKNHDDEIRVYEYLPKDLDYYSLMQNSKFCLCPSGHEVASPRIVEAIYAECVPVILSKYYVLPFSDVLQWEAFSVQVDVSDIPRLKEILSAISDDKYRMLKEGVKAVRRHFTLNRPAKRFDVFHMILHSIWLRRLNIELR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0556 479 Gene3D Glycogen Phosphorylase B; 314 454 - -
Ssu5g0556 479 PANTHER XYLOGALACTURONAN BETA-1,3-XYLOSYLTRANSFERASE 72 476 - -
Ssu5g0556 479 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 269 459 - -
Ssu5g0556 479 Pfam Exostosin family 148 430 IPR040911 -
Ssu5g0556 479 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 72 476 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0556 Ssu-Chr5 12230786 12238475 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0556 - - gmx:100794890 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0556 5 12230786 12238475 Ssu5g0556 5 12230786 12238475 ECH
Ssu5g0556 5 12230786 12238475 Ssu1g3474 1 89032561 89036780 PCT