Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3474 atgaagatttgTCGGAGGCGCTTGTTTCTATTCGAAACTTTGTTGCTCTTTCTATCGTTGATCGTCATTGAATGGGTACTTCCATGGCAGTTGATGAGATTCACCGACTCCAATCCGGAATATTCCGATCCTCTTCACCACTTTCGAAGACAGGTTTCCGGCGAGAATCAACTCCGTGCCGTTGGAGACGCCGCCCACTCAAATAACAACATAACCAGGGAAGTAGCGAGAGTGAAGAGCAGAGAAGAAATGCGAGAAGAAGGACTCGCGCGAGCAAGAGCTTCGATGCGCATAGCGGCATTAGCTGGAAGAAATCTCACTCCGCCAACAGCACACGATAAAGACATTCCCGCTGGAACTGTTTATCGCAACCCTCGCTTATTTTACCGgAGTTACTTGGAGATGGAGAAGATATTCAAGGTATACGTATACCCAGAAGGGGACCTACCAATTGTTCACGATGGCCCGTGCAAGGACATATACTCCATTGAAGGGAGGTTCCTCCATGAGATGGAACATGGGGTTGGGAGGTTTAGGACCAACGACCCCACTGCGGCTCACCTTTACTTTCTTCCATTCAGCGTGACATGGATGGTCAAGTACCTCTATACACCAAACTCGTATGACATAACTCCTTTAAAGCATTTTGTCTCTGACTACGTGAGAGTGATATTCACGAAGTACCCCTTCTGGAATAAAACTCATGGTGCCGACCACTTCATGGTTGCTTGTCATGATTGGGGTCCTTATGCATCAGAAGGAAACCCTTTCCTCTACAACACCTCCATCCGGGTCTTGTGCAATGCCAACACTTCTGAAGGCTTCAACCCTCTAAAGGATGTAACTCTACCGGAAATCTACCTCTATGGAGGTGAAGTATCCCCTAAACTTCTTTCACCTCCACCGGACAATGGCCCACGCCGCTATCTTGCCTTCTTCGCCGGTGGCATGCACGGCCCAATTCGCCCCATCCTGCTCCACCACTGGAAAAACCGAGACAATGATATACGTGTCCACGAGTATCTCCCGAAAGACCTAGACTACTATTCCTTCATGCTCAGCTCCAACTCAAATACGCATAGacagaacaaaagaaaattcttagGCATGCAAgattatttaccataa 1128 0.4645 MKICRRRLFLFETLLLFLSLIVIEWVLPWQLMRFTDSNPEYSDPLHHFRRQVSGENQLRAVGDAAHSNNNITREVARVKSREEMREEGLARARASMRIAALAGRNLTPPTAHDKDIPAGTVYRNPRLFYRSYLEMEKIFKVYVYPEGDLPIVHDGPCKDIYSIEGRFLHEMEHGVGRFRTNDPTAAHLYFLPFSVTWMVKYLYTPNSYDITPLKHFVSDYVRVIFTKYPFWNKTHGADHFMVACHDWGPYASEGNPFLYNTSIRVLCNANTSEGFNPLKDVTLPEIYLYGGEVSPKLLSPPPDNGPRRYLAFFAGGMHGPIRPILLHHWKNRDNDIRVHEYLPKDLDYYSFMLSSNSNTHRQNKRKFLGMQDYLP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3474 375 PANTHER XYLOGALACTURONAN BETA-1,3-XYLOSYLTRANSFERASE 64 355 - -
Ssu1g3474 375 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 64 355 IPR004263 GO:0006486|GO:0016757
Ssu1g3474 375 Pfam Exostosin family 137 336 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3474 Ssu-Chr1 89032561 89036780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3474 - - gmx:102659997 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3474 1 89032561 89036780 Ssu1g3474 1 89032561 89036780 ECH
Ssu5g0556 5 12230786 12238475 Ssu1g3474 1 89032561 89036780 PCT