Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0554 ATGTCAGAGATAAGTCATGGATTTATTTGCCACAAGCCCACAAATTATCTTGATAAGGATGAGAATATGGATTTAAATGTTAAGAAAGCAATTCTCGTGGgaagTTATTTTGTTATGGGTTGGAGATACAAGGTGGGGTTGTTCCTCATAGCTATTGTGGTTATCATATGGGTCACCTCTGCTGAAGTCACCCAGTTTATATATGAATGCTTCtctgaattaaattttttctatacaGGATATTTTATAGATTACAAGCAGCCATTTGTAGTGACATATCTTGGAGTTTCTCTTATGGTAGTTTACCTCCCAATAGCATTCATTAAGGATTggttttataagttatttaaacACTACTCTtctaaaagtggaaaaaatgcCAATATTGGGGATAGGTTTTCTATCAAGAGTTCCTCTCCTCTCAAAGGCAGTGGAGTGCAAAAAAACTGTGAAGTAGAATTGGGGAGTGTGAATCAAAAAGATAGTGATTCAAACCTTTCAACTCATGAAGAAGTAAAGCCATTGGTAGCTAAATATAATGATGCTAACATGATAAAGGCAGAGAAAGAACTTACTACAAGGGAAATTGCTATTTATGGATTTTACATTACACCTATCTGGTTTATAACAGAGtATCTATCAAATGCTGCCCTTGCACGAACAAGTGTTGCAAGTACAACAGTATTGTCATCTACTTCGGGACTCTTCACTCTCTTCATTGGTGTGTTTATGGGCCAAGACACTTTAAATGTAGCAAAAGTAGTTGCTGTCTTGGTCAGCATAGCTGGGGTTATGATGACAACTTTGGGGAAAACATGGGCTGCAGATGACTCACTATCAAATGCTTCCAATGGACAACGCTCTCTTATTGGCGATCTTTTTGGCCTTCTCTCGGCCATGTCATATGGTCTATTTACAAttcttcttaaaaaaatttctggtGAAGAAGGAGAACGAGTTGATGTGCAAAAGTTGTTTGGATATATTGGATTGTTTACACTTGTAGCACTATGGTGGCTTATCTGGCCATTATCAGCCTTAGGAATTGAACCTAAGTTTATGATTCCTCATTCAGCTAGAATGGACGAAGTGGTTCTTGCCAATGGATTTGTTGGAAGTGTTCTCTCAGACTACTTTTGGGCACTTAGTGTTGTATGGACAACTCCCCTTGTGGCCACTTTAGGCACGTCACTCACCATTCCCCTTGCTATGTTGGCCGACATGGTTATCCATGGTCGGCATTATTCGACATTGTACATTCTTGGCTCAGCTCAGGTGCCTTATTCACTCCTCAACGATTGGGCCAAGTCATCAGCCTCTGAATTTTGGGGCTAG 1335 0.376 MSEISHGFICHKPTNYLDKDENMDLNVKKAILVGSYFVMGWRYKVGLFLIAIVVIIWVTSAEVTQFIYECFSELNFFYTGYFIDYKQPFVVTYLGVSLMVVYLPIAFIKDWFYKLFKHYSSKSGKNANIGDRFSIKSSSPLKGSGVQKNCEVELGSVNQKDSDSNLSTHEEVKPLVAKYNDANMIKAEKELTTREIAIYGFYITPIWFITEYLSNAALARTSVASTTVLSSTSGLFTLFIGVFMGQDTLNVAKVVAVLVSIAGVMMTTLGKTWAADDSLSNASNGQRSLIGDLFGLLSAMSYGLFTILLKKISGEEGERVDVQKLFGYIGLFTLVALWWLIWPLSALGIEPKFMIPHSARMDEVVLANGFVGSVLSDYFWALSVVWTTPLVATLGTSLTIPLAMLADMVIHGRHYSTLYILGSAQVPYSLLNDWAKSSASEFWG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0554 444 PANTHER SOLUTE CARRIER FAMILY 35, MEMBER F5 39 427 - -
Ssu5g0554 444 PANTHER OSJNBA0070O11.5 PROTEIN 39 427 - -
Ssu5g0554 444 SUPERFAMILY Multidrug resistance efflux transporter EmrE 192 271 - -
Ssu5g0554 444 Pfam EamA-like transporter family 189 268 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0554 Ssu-Chr5 12180012 12189909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0554 K15289 - gmx:100816847 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0554 5 12180012 12189909 Ssu1g3477 1 89073753 89080325 PCT