Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3477 ATGGGTTGGAGATACAACGCTGGCTTGTTTCTCATAGCCACTGTCGTTATTATTTGGGTCACCTCCGCTGAAGTTACCCAGGATATTTTTGCAGATTATAAGCAGCCATTTGCAGTGACATATCTTGGAGCTTCTCTTCTGGTAGTTTACCTCCCAATAGCATTCATTAAGGACTGGTTCTGTAACTTACTTAAATGCCGCTCCTCTAAAAGTGGTAAAAATGCAGAATGCGTGGATGAGTTTTCTGTCAGGATTAGCTCTCCTCTCAAAAGCAATGGAGTGCAGAAAAACTTTGAACTGGAACTGGGGAGTGTGATTCGAAAAGATAGTGATTTAGACCTTTTAACACTTGCAGAAATAAAGCCATTAGTAgctaaatataatgataatgctAATGTGCTAAAGGTGGAGAGACAACTTACTTGGAAGGAAATTGCTACTTATGGATTTTACATTGCACCTATCTGGTTCATAACAGAGTATCTATCAAATGCTGCCCTTGCACGAACAAGTGTTGCAAGCACGACAGTATTATCATCAACTTCAGGACTTTTCACTCTTTTCATTGGTGCATTTATGGGTCAAGACTCTTTAAATGTAGCAAAAGTAGTTGCTGTCTTAGTCAGCATGGCTGGGGTTGTCATGACAACACTGGGGAAAACTTGGGCTGCAGATGAATCCCAATTAAGTGATGCCAATGGAAAGCACTCTTTAGTTGGAGATCTTTTTGGAATTCTCTCAGCTATGACATATGGTCTATTTACAGTTCTTCTTAAGAAGTTTTGTGGTGAAGAAGGAGAAAGGGTTGATGTGCAAAAGCTGTTTGGGTATATTGGATTGTTTACACTTGTAGCACTGTGGTGGCTTGTCTGGCCATTGATGGCCTTAGGAATTGAACCCAAATTTACCATTCCCCACTCTGCTAAAGTGGACGAAGTGGTTCTTGCAAATGGATTTATTGGAAGTGTACTTTCAGACTACTTCTGGGCACTTTGTGTTGTATGGACTACTCCCCTTGTGGCCACGTTGGGTATGTCACTCACCATTCCTCTCGCTATGGTGGCTGACATGGTCATTCATGGTCGGCATTACTCAGCAATATACATTCTTGGCTCAGCTCAGGTATTTGCAGGCTTTGTAATAGCGAATCTTTCAGATTGGTTGACGAAGAAGTTGGGATTGTAG 1185 0.4101 MGWRYNAGLFLIATVVIIWVTSAEVTQDIFADYKQPFAVTYLGASLLVVYLPIAFIKDWFCNLLKCRSSKSGKNAECVDEFSVRISSPLKSNGVQKNFELELGSVIRKDSDLDLLTLAEIKPLVAKYNDNANVLKVERQLTWKEIATYGFYIAPIWFITEYLSNAALARTSVASTTVLSSTSGLFTLFIGAFMGQDSLNVAKVVAVLVSMAGVVMTTLGKTWAADESQLSDANGKHSLVGDLFGILSAMTYGLFTVLLKKFCGEEGERVDVQKLFGYIGLFTLVALWWLVWPLMALGIEPKFTIPHSAKVDEVVLANGFIGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADMVIHGRHYSAIYILGSAQVFAGFVIANLSDWLTKKLGL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3477 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 138 220 - -
Ssu1g3477 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 280 387 - -
Ssu1g3477 394 PANTHER OSJNBA0070O11.5 PROTEIN 1 393 - -
Ssu1g3477 394 PANTHER SOLUTE CARRIER FAMILY 35, MEMBER F5 1 393 - -
Ssu1g3477 394 Pfam EamA-like transporter family 138 217 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3477 Ssu-Chr1 89073753 89080325 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3477 K15289 - gmx:100792013 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0554 5 12180012 12189909 Ssu1g3477 1 89073753 89080325 PCT